Variant report

Variant	rs7766541
Chromosome Location	chr6:127843873-127843874
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr6:127843863-127844275	A549	lung:	n/a	n/a
2	FOSL2	chr6:127843816-127844350	A549	lung:	n/a	chr6:127844305-127844312

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:127838875..127840763-chr6:127842438..127844630,2	K562	blood:

Variant related genes	Relation type
SOGA3	TF binding region
ENSG00000255330	TF binding region
ENSG00000214338	Chromatin interaction
ENSG00000184530	Chromatin interaction
ENSG00000255330	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1080436	1.00[ASN][1000 genomes]
rs1115440	1.00[ASN][1000 genomes]
rs12201026	1.00[ASN][1000 genomes]
rs12201136	1.00[ASN][1000 genomes]
rs1318049	1.00[ASN][1000 genomes]
rs1374983	0.81[CEU][hapmap];0.81[GIH][hapmap];1.00[ASN][1000 genomes]
rs1448055	0.89[CEU][hapmap]
rs1448056	1.00[ASN][1000 genomes]
rs1512455	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512456	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512461	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512462	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512463	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533186	1.00[CEU][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588647	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588648	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606331	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606333	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606335	0.87[EUR][1000 genomes]
rs17205908	1.00[ASN][1000 genomes]
rs1828612	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1913079	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1913080	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949173	0.92[CEU][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1980060	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068626	1.00[ASN][1000 genomes]
rs2068981	1.00[ASN][1000 genomes]
rs2166835	1.00[ASN][1000 genomes]
rs2221878	1.00[ASN][1000 genomes]
rs3948102	1.00[ASN][1000 genomes]
rs486235	1.00[ASN][1000 genomes]
rs4897215	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490008	1.00[ASN][1000 genomes]
rs505827	1.00[ASN][1000 genomes]
rs550875	1.00[ASN][1000 genomes]
rs564461	1.00[ASN][1000 genomes]
rs583072	1.00[ASN][1000 genomes]
rs583956	1.00[ASN][1000 genomes]
rs607496	1.00[ASN][1000 genomes]
rs614885	1.00[ASN][1000 genomes]
rs62437269	1.00[ASN][1000 genomes]
rs648151	1.00[ASN][1000 genomes]
rs655681	1.00[ASN][1000 genomes]
rs6569495	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569497	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs674751	1.00[ASN][1000 genomes]
rs680544	1.00[ASN][1000 genomes]
rs682312	1.00[ASN][1000 genomes]
rs683202	1.00[ASN][1000 genomes]
rs6909510	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919416	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6920033	1.00[ASN][1000 genomes]
rs6921497	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929441	0.83[EUR][1000 genomes]
rs6942097	0.81[CEU][hapmap]
rs766819	1.00[ASN][1000 genomes]
rs766820	1.00[ASN][1000 genomes]
rs7746884	1.00[ASN][1000 genomes]
rs7747070	1.00[ASN][1000 genomes]
rs7749538	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749800	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751559	1.00[ASN][1000 genomes]
rs7751643	1.00[ASN][1000 genomes]
rs7754603	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7761797	0.96[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765261	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs9385434	1.00[ASN][1000 genomes]
rs9388583	0.83[EUR][1000 genomes]
rs9398851	1.00[ASN][1000 genomes]
rs956693	1.00[ASN][1000 genomes]
rs976089	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966660	chr6:127838481-127890221	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830798	chr6:127841026-127987850	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127843800-127844000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:127843800-127844400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:127843800-127845200	Enhancers	A549	lung

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