Variant report

Variant	rs1606335
Chromosome Location	chr6:127872470-127872471
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1512455	0.89[EUR][1000 genomes]
rs1512456	0.90[EUR][1000 genomes]
rs1512461	0.88[EUR][1000 genomes]
rs1512462	0.90[EUR][1000 genomes]
rs1512463	0.90[EUR][1000 genomes]
rs1533186	0.87[EUR][1000 genomes]
rs1588648	0.90[EUR][1000 genomes]
rs1606331	0.89[EUR][1000 genomes]
rs1606333	0.89[EUR][1000 genomes]
rs1828612	0.90[EUR][1000 genomes]
rs1913079	0.89[EUR][1000 genomes]
rs1913080	0.90[EUR][1000 genomes]
rs1980060	0.89[EUR][1000 genomes]
rs4897215	0.87[EUR][1000 genomes]
rs6569495	0.87[EUR][1000 genomes]
rs6569497	0.89[EUR][1000 genomes]
rs6909510	0.87[EUR][1000 genomes]
rs6921497	0.87[EUR][1000 genomes]
rs7749538	0.89[EUR][1000 genomes]
rs7749800	0.89[EUR][1000 genomes]
rs7761797	0.87[EUR][1000 genomes]
rs7766541	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966660	chr6:127838481-127890221	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830798	chr6:127841026-127987850	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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