Variant report

Variant	rs7761797
Chromosome Location	chr6:127843293-127843294
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:127838875..127840763-chr6:127842438..127844630,2	K562	blood:

Variant related genes	Relation type
ENSG00000255330	Chromatin interaction
ENSG00000214338	Chromatin interaction
ENSG00000184530	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1080436	1.00[ASN][1000 genomes]
rs1115440	1.00[ASN][1000 genomes]
rs12201026	1.00[ASN][1000 genomes]
rs12201136	1.00[ASN][1000 genomes]
rs1318049	1.00[ASN][1000 genomes]
rs1374983	1.00[ASN][1000 genomes]
rs1448055	0.88[CEU][hapmap]
rs1448056	1.00[ASN][1000 genomes]
rs1512455	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512456	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512461	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512462	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512463	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533186	0.96[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588647	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588648	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606331	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606333	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606335	0.87[EUR][1000 genomes]
rs17205908	1.00[ASN][1000 genomes]
rs1828612	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1913079	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1913080	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949173	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1980060	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068626	1.00[ASN][1000 genomes]
rs2068981	1.00[ASN][1000 genomes]
rs2166835	1.00[ASN][1000 genomes]
rs2221878	1.00[ASN][1000 genomes]
rs3948102	1.00[ASN][1000 genomes]
rs486235	1.00[ASN][1000 genomes]
rs4897215	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490008	1.00[ASN][1000 genomes]
rs505827	1.00[ASN][1000 genomes]
rs550875	1.00[ASN][1000 genomes]
rs564461	1.00[ASN][1000 genomes]
rs583072	1.00[ASN][1000 genomes]
rs583956	1.00[ASN][1000 genomes]
rs607496	1.00[ASN][1000 genomes]
rs614885	1.00[ASN][1000 genomes]
rs62437269	1.00[ASN][1000 genomes]
rs648151	1.00[ASN][1000 genomes]
rs655681	1.00[ASN][1000 genomes]
rs6569495	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569497	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs674751	1.00[ASN][1000 genomes]
rs680544	1.00[ASN][1000 genomes]
rs682312	1.00[ASN][1000 genomes]
rs683202	1.00[ASN][1000 genomes]
rs6909510	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919416	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs6920033	1.00[ASN][1000 genomes]
rs6921497	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929441	0.83[EUR][1000 genomes]
rs6942097	0.80[CEU][hapmap]
rs766819	1.00[ASN][1000 genomes]
rs766820	1.00[ASN][1000 genomes]
rs7746884	1.00[ASN][1000 genomes]
rs7747070	1.00[ASN][1000 genomes]
rs7749538	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749800	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751559	1.00[ASN][1000 genomes]
rs7751643	1.00[ASN][1000 genomes]
rs7754603	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7765261	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs7766541	0.96[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385434	1.00[ASN][1000 genomes]
rs9388583	0.83[EUR][1000 genomes]
rs9398851	1.00[ASN][1000 genomes]
rs956693	1.00[ASN][1000 genomes]
rs976089	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966660	chr6:127838481-127890221	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830798	chr6:127841026-127987850	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127841400-127843800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:127841600-127843800	Weak transcription	A549	lung

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