Variant report
| Variant | rs9388583 |
|---|---|
| Chromosome Location | chr6:127844340-127844341 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | KAP1 | chr6:127844061-127844411 | K562 | blood: | n/a | n/a |
| 2 | FOSL2 | chr6:127843816-127844350 | A549 | lung: | n/a | chr6:127844305-127844312 |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:127838875..127840763-chr6:127842438..127844630,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255330 | TF binding region |
| SOGA3 | TF binding region |
| ENSG00000214338 | Chromatin interaction |
| ENSG00000184530 | Chromatin interaction |
| ENSG00000255330 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1512455 | 0.81[EUR][1000 genomes] |
| rs1512456 | 0.81[EUR][1000 genomes] |
| rs1512462 | 0.81[EUR][1000 genomes] |
| rs1512463 | 0.81[EUR][1000 genomes] |
| rs1533186 | 0.83[EUR][1000 genomes] |
| rs1588648 | 0.81[EUR][1000 genomes] |
| rs1606331 | 0.81[EUR][1000 genomes] |
| rs1606333 | 0.81[EUR][1000 genomes] |
| rs1828612 | 0.81[EUR][1000 genomes] |
| rs1913080 | 0.81[EUR][1000 genomes] |
| rs1949173 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1980060 | 0.81[EUR][1000 genomes] |
| rs4897215 | 0.83[EUR][1000 genomes] |
| rs6569495 | 0.83[EUR][1000 genomes] |
| rs6569497 | 0.81[EUR][1000 genomes] |
| rs6909510 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6919416 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6921497 | 0.83[EUR][1000 genomes] |
| rs6929441 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7749538 | 0.81[EUR][1000 genomes] |
| rs7749800 | 0.81[EUR][1000 genomes] |
| rs7754603 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7761797 | 0.83[EUR][1000 genomes] |
| rs7765261 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7766541 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv966660 | chr6:127838481-127890221 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv830798 | chr6:127841026-127987850 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:127843800-127844400 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr6:127843800-127845200 | Enhancers | A549 | lung |
