Variant report
| Variant | rs7754603 |
|---|---|
| Chromosome Location | chr6:127847358-127847359 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:127840264..127843868-chr6:127847289..127850777,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000214338 | Chromatin interaction |
| ENSG00000184530 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1448055 | 0.82[CEU][hapmap] |
| rs1512455 | 0.82[EUR][1000 genomes] |
| rs1512456 | 0.93[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs1512462 | 0.81[EUR][1000 genomes] |
| rs1512463 | 0.81[EUR][1000 genomes] |
| rs1533186 | 0.93[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs1588648 | 0.81[EUR][1000 genomes] |
| rs1606331 | 0.82[EUR][1000 genomes] |
| rs1606333 | 0.93[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs1828612 | 0.81[EUR][1000 genomes] |
| rs1913079 | 0.80[EUR][1000 genomes] |
| rs1913080 | 0.81[EUR][1000 genomes] |
| rs1949173 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1980060 | 0.82[EUR][1000 genomes] |
| rs4897215 | 0.84[EUR][1000 genomes] |
| rs6569495 | 0.84[EUR][1000 genomes] |
| rs6569497 | 0.92[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs6909510 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6919416 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6921497 | 0.84[EUR][1000 genomes] |
| rs6929441 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7749538 | 0.82[EUR][1000 genomes] |
| rs7749800 | 0.82[EUR][1000 genomes] |
| rs7761797 | 0.89[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs7765261 | 0.92[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7766541 | 0.92[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs9388583 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv966660 | chr6:127838481-127890221 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv830798 | chr6:127841026-127987850 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | esv3425844 | chr6:127847319-127847784 | Inactive region | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
