Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1448055	0.82[CEU][hapmap]
rs1512455	0.83[EUR][1000 genomes]
rs1512456	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs1512461	0.80[EUR][1000 genomes]
rs1512462	0.82[EUR][1000 genomes]
rs1512463	0.82[EUR][1000 genomes]
rs1533186	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs1588648	0.82[EUR][1000 genomes]
rs1606331	0.83[EUR][1000 genomes]
rs1606333	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs1828612	0.82[EUR][1000 genomes]
rs1913079	0.81[EUR][1000 genomes]
rs1913080	0.82[EUR][1000 genomes]
rs1949173	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1980060	0.83[EUR][1000 genomes]
rs4897215	0.85[EUR][1000 genomes]
rs6569495	0.85[EUR][1000 genomes]
rs6569497	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs6909510	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6921497	0.85[EUR][1000 genomes]
rs6929441	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7749538	0.83[EUR][1000 genomes]
rs7749800	0.83[EUR][1000 genomes]
rs7754603	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761797	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs7765261	0.92[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7766541	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9388583	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966660	chr6:127838481-127890221	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830798	chr6:127841026-127987850	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127841400-127843800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:127841600-127843800	Weak transcription	A549	lung

Quick Search: