Variant report

Variant	rs1448055
Chromosome Location	chr6:127896979-127896980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1080436	0.89[CEU][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1115440	1.00[ASN][1000 genomes]
rs12201026	1.00[ASN][1000 genomes]
rs12201136	1.00[ASN][1000 genomes]
rs1318049	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374983	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1448056	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1448057	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1512455	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1512456	0.89[CEU][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1512461	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1512462	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1512463	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1533186	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs1550942	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1588647	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588648	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1606331	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1606333	0.89[CEU][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17205908	1.00[ASN][1000 genomes]
rs1828612	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1913079	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1913080	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1949173	0.81[CEU][hapmap]
rs1980060	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2068626	1.00[ASN][1000 genomes]
rs2068981	1.00[ASN][1000 genomes]
rs2166835	1.00[ASN][1000 genomes]
rs2221878	0.96[CEU][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3948102	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs486235	1.00[ASN][1000 genomes]
rs4897215	1.00[ASN][1000 genomes]
rs490008	1.00[ASN][1000 genomes]
rs505827	1.00[ASN][1000 genomes]
rs550875	1.00[ASN][1000 genomes]
rs564461	1.00[ASN][1000 genomes]
rs583072	1.00[ASN][1000 genomes]
rs583956	1.00[ASN][1000 genomes]
rs607496	1.00[ASN][1000 genomes]
rs614885	1.00[ASN][1000 genomes]
rs648151	1.00[ASN][1000 genomes]
rs655681	1.00[ASN][1000 genomes]
rs6569495	1.00[ASN][1000 genomes]
rs6569497	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs674751	1.00[ASN][1000 genomes]
rs680544	1.00[ASN][1000 genomes]
rs682312	1.00[ASN][1000 genomes]
rs683202	1.00[ASN][1000 genomes]
rs6909510	1.00[ASN][1000 genomes]
rs6919416	0.82[CEU][hapmap]
rs6920033	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921497	1.00[ASN][1000 genomes]
rs6942097	0.95[CEU][hapmap]
rs766819	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766820	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746884	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747070	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749538	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7749800	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7751559	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751643	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754603	0.82[CEU][hapmap]
rs7761797	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs7766541	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs9385434	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398851	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956693	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976089	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830798	chr6:127841026-127987850	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1024149	chr6:127891439-127966083	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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