Variant report

Variant	rs2166835
Chromosome Location	chr6:127913413-127913414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1080436	1.00[ASN][1000 genomes]
rs1115440	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201026	1.00[ASN][1000 genomes]
rs12201136	1.00[ASN][1000 genomes]
rs1318049	1.00[ASN][1000 genomes]
rs1374983	1.00[ASN][1000 genomes]
rs1448056	1.00[ASN][1000 genomes]
rs1512455	1.00[ASN][1000 genomes]
rs1512456	1.00[ASN][1000 genomes]
rs1512461	1.00[ASN][1000 genomes]
rs1512462	1.00[ASN][1000 genomes]
rs1512463	1.00[ASN][1000 genomes]
rs1533186	1.00[ASN][1000 genomes]
rs1588647	1.00[ASN][1000 genomes]
rs1588648	1.00[ASN][1000 genomes]
rs1606331	1.00[ASN][1000 genomes]
rs1606333	1.00[ASN][1000 genomes]
rs17205908	1.00[ASN][1000 genomes]
rs1828612	1.00[ASN][1000 genomes]
rs1913079	1.00[ASN][1000 genomes]
rs1913080	1.00[ASN][1000 genomes]
rs1980060	1.00[ASN][1000 genomes]
rs2068626	1.00[ASN][1000 genomes]
rs2068981	1.00[ASN][1000 genomes]
rs2221878	1.00[ASN][1000 genomes]
rs3948102	1.00[ASN][1000 genomes]
rs486235	1.00[ASN][1000 genomes]
rs4897215	1.00[ASN][1000 genomes]
rs490008	1.00[ASN][1000 genomes]
rs505827	1.00[ASN][1000 genomes]
rs550875	1.00[ASN][1000 genomes]
rs564461	1.00[ASN][1000 genomes]
rs583072	1.00[ASN][1000 genomes]
rs583956	1.00[ASN][1000 genomes]
rs607496	1.00[ASN][1000 genomes]
rs614885	1.00[ASN][1000 genomes]
rs648151	1.00[ASN][1000 genomes]
rs655681	1.00[ASN][1000 genomes]
rs6569495	1.00[ASN][1000 genomes]
rs6569497	1.00[ASN][1000 genomes]
rs674751	1.00[ASN][1000 genomes]
rs680544	1.00[ASN][1000 genomes]
rs682312	1.00[ASN][1000 genomes]
rs683202	1.00[ASN][1000 genomes]
rs6909510	1.00[ASN][1000 genomes]
rs6920033	1.00[ASN][1000 genomes]
rs6921497	1.00[ASN][1000 genomes]
rs766819	1.00[ASN][1000 genomes]
rs766820	1.00[ASN][1000 genomes]
rs7746884	1.00[ASN][1000 genomes]
rs7747070	1.00[ASN][1000 genomes]
rs7749538	1.00[ASN][1000 genomes]
rs7749800	1.00[ASN][1000 genomes]
rs7751559	1.00[ASN][1000 genomes]
rs7751643	1.00[ASN][1000 genomes]
rs7761797	1.00[ASN][1000 genomes]
rs7766541	1.00[ASN][1000 genomes]
rs9385434	1.00[ASN][1000 genomes]
rs9398851	1.00[ASN][1000 genomes]
rs956693	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830798	chr6:127841026-127987850	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1024149	chr6:127891439-127966083	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127905000-127913800	Weak transcription	A549	lung
2	chr6:127912200-127913800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:127913000-127914200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:127913400-127913600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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