Variant report

Variant	rs1080436
Chromosome Location	chr6:127903054-127903055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:127891381..127893931-chr6:127901413..127904359,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1115440	1.00[ASN][1000 genomes]
rs11154413	1.00[CHD][hapmap]
rs12201026	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12201136	1.00[ASN][1000 genomes]
rs1318049	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374983	0.92[CEU][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1448055	0.89[CEU][hapmap];0.82[YRI][hapmap]
rs1448056	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1448057	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1512455	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1512456	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1512461	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1512462	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1512463	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1533186	1.00[ASN][1000 genomes]
rs1550942	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1588647	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1588648	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1606331	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1606333	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17205908	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs1828612	1.00[ASN][1000 genomes]
rs1913079	1.00[ASN][1000 genomes]
rs1913080	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1949173	1.00[CHD][hapmap]
rs1980060	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2068626	1.00[ASN][1000 genomes]
rs2068981	1.00[ASN][1000 genomes]
rs2166835	1.00[ASN][1000 genomes]
rs2221878	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270011	1.00[CHD][hapmap]
rs270015	1.00[CHD][hapmap]
rs3948102	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs486235	1.00[ASN][1000 genomes]
rs4897215	1.00[ASN][1000 genomes]
rs490008	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs500192	1.00[CHD][hapmap]
rs505827	1.00[ASN][1000 genomes]
rs550875	1.00[ASN][1000 genomes]
rs564461	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs579177	1.00[CHD][hapmap]
rs583072	1.00[ASN][1000 genomes]
rs583956	1.00[ASN][1000 genomes]
rs607496	1.00[ASN][1000 genomes]
rs614885	1.00[ASN][1000 genomes]
rs648151	1.00[ASN][1000 genomes]
rs655681	1.00[ASN][1000 genomes]
rs6569495	1.00[ASN][1000 genomes]
rs6569497	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6569504	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap]
rs674751	1.00[ASN][1000 genomes]
rs680544	1.00[ASN][1000 genomes]
rs682312	1.00[ASN][1000 genomes]
rs683202	1.00[ASN][1000 genomes]
rs6909510	1.00[ASN][1000 genomes]
rs6909829	1.00[CHD][hapmap]
rs6920033	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921497	1.00[ASN][1000 genomes]
rs6942097	0.86[CEU][hapmap]
rs766819	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766820	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746884	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747070	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749538	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7749800	1.00[ASN][1000 genomes]
rs7751559	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751643	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761797	1.00[ASN][1000 genomes]
rs7766541	1.00[ASN][1000 genomes]
rs9385434	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398851	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956693	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976089	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830798	chr6:127841026-127987850	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1024149	chr6:127891439-127966083	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127901000-127907200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:127903000-127903600	Weak transcription	HMEC	breast

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