Variant report

Variant	rs6569504
Chromosome Location	chr6:127909720-127909721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1080436	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap]
rs11154413	1.00[CHD][hapmap]
rs12201026	1.00[CHD][hapmap]
rs1374983	1.00[CHD][hapmap]
rs17205908	1.00[CHD][hapmap]
rs1949173	1.00[CHD][hapmap]
rs2221878	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap]
rs270011	1.00[CHD][hapmap]
rs270015	1.00[CHD][hapmap]
rs490008	1.00[CHD][hapmap]
rs500192	1.00[CHD][hapmap]
rs564461	1.00[CHD][hapmap]
rs579177	1.00[CHD][hapmap]
rs6569497	1.00[CHD][hapmap]
rs6909829	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830798	chr6:127841026-127987850	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1024149	chr6:127891439-127966083	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127905000-127913800	Weak transcription	A549	lung
2	chr6:127907800-127910200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:127908000-127909800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:127908200-127910000	Weak transcription	NHEK	skin
5	chr6:127908200-127910200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:127908200-127910400	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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