Variant report

Variant	rs6909829
Chromosome Location	chr6:127798402-127798403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10457501	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080436	1.00[CHD][hapmap]
rs10872319	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11154410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154413	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154414	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1154642	1.00[CHB][hapmap]
rs11759744	1.00[ASN][1000 genomes]
rs11962618	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11965031	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967682	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12194762	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193647	1.00[ASN][1000 genomes]
rs13194028	1.00[ASN][1000 genomes]
rs13194280	1.00[CHB][hapmap]
rs13207650	1.00[ASN][1000 genomes]
rs1374983	1.00[CHD][hapmap]
rs17205908	1.00[CHD][hapmap]
rs17272843	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949173	1.00[CHD][hapmap]
rs2221878	1.00[CHD][hapmap]
rs34239340	1.00[ASN][1000 genomes]
rs34362686	1.00[ASN][1000 genomes]
rs35237558	1.00[ASN][1000 genomes]
rs36000432	1.00[ASN][1000 genomes]
rs41285272	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321843	1.00[ASN][1000 genomes]
rs4476846	1.00[CHB][hapmap]
rs500192	1.00[CHD][hapmap]
rs579177	1.00[CHD][hapmap]
rs6569497	1.00[CHD][hapmap]
rs6569504	1.00[CHD][hapmap]
rs6910292	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913216	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6914921	1.00[ASN][1000 genomes]
rs6932990	1.00[ASN][1000 genomes]
rs6936370	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6937964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939662	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7738747	1.00[ASN][1000 genomes]
rs7761452	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7766903	1.00[CHB][hapmap]
rs9321092	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388581	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401964	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127780400-127803800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:127780600-127804400	Weak transcription	Right Atrium	heart
3	chr6:127781000-127804800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:127783800-127805000	Strong transcription	Fetal Brain Female	brain
5	chr6:127786600-127801600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:127786600-127805200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:127786800-127804800	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:127789400-127802200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:127790200-127801200	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:127790800-127802200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:127791200-127804800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:127791600-127802200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:127793600-127801600	Weak transcription	Osteobl	bone
14	chr6:127793600-127802200	Weak transcription	HSMM	muscle
15	chr6:127793600-127804400	Weak transcription	A549	lung
16	chr6:127793600-127804400	Weak transcription	HSMMtube	muscle
17	chr6:127793600-127804600	Weak transcription	NHDF-Ad	bronchial
18	chr6:127793600-127805000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:127793800-127804600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:127794600-127804600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:127795000-127800000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:127795200-127801200	Weak transcription	Fetal Brain Male	brain
23	chr6:127795200-127804600	Weak transcription	Dnd41	blood
24	chr6:127795400-127802400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:127795400-127803000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:127795800-127800400	Strong transcription	Brain Angular Gyrus	brain
27	chr6:127796000-127802200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:127796800-127802000	Weak transcription	Fetal Lung	lung
29	chr6:127797200-127801000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:127797200-127804400	Weak transcription	Pancreas	Pancrea
31	chr6:127797200-127804600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:127797200-127804600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:127797200-127807600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:127797400-127799000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:127797400-127799000	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:127797400-127799200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:127797400-127800400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:127797400-127801600	Strong transcription	NH-A	brain
39	chr6:127797400-127801800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:127797400-127802000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:127797400-127802400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:127797400-127802800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:127797400-127803000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:127797400-127804400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:127797400-127804400	Weak transcription	Ovary	ovary
46	chr6:127797400-127804400	Weak transcription	NHLF	lung
47	chr6:127797400-127804600	Weak transcription	Brain Substantia Nigra	brain
48	chr6:127797400-127804600	Weak transcription	Lung	lung
49	chr6:127797400-127805000	Strong transcription	Brain Germinal Matrix	brain
50	chr6:127797400-127805000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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