Variant report

Variant	rs34239340
Chromosome Location	chr6:127617539-127617540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNF146-1	chr6:127617335-127617896	NONHSAT114847

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10457501	1.00[ASN][1000 genomes]
rs11154410	1.00[ASN][1000 genomes]
rs11154413	1.00[ASN][1000 genomes]
rs11759744	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965031	1.00[ASN][1000 genomes]
rs12194762	1.00[ASN][1000 genomes]
rs13193647	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194028	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207650	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272843	1.00[ASN][1000 genomes]
rs34362686	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237558	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36000432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41285272	1.00[ASN][1000 genomes]
rs4321843	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909829	1.00[ASN][1000 genomes]
rs6910292	1.00[ASN][1000 genomes]
rs6914921	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932990	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937964	1.00[ASN][1000 genomes]
rs6939662	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738747	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761452	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772035	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9321092	1.00[ASN][1000 genomes]
rs9388581	1.00[ASN][1000 genomes]
rs9401964	1.00[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127600400-127618000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:127601000-127619000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:127601200-127618000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:127601600-127621800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr6:127604000-127618400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:127605000-127660800	Weak transcription	Hela-S3	cervix
7	chr6:127608600-127625000	Weak transcription	Colonic Mucosa	Colon
8	chr6:127608800-127620800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:127608800-127621000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:127608800-127621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:127608800-127621800	Weak transcription	Fetal Stomach	stomach
12	chr6:127608800-127628000	Weak transcription	Spleen	Spleen
13	chr6:127608800-127633400	Weak transcription	Fetal Kidney	kidney
14	chr6:127608800-127634400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:127608800-127635200	Weak transcription	K562	blood
16	chr6:127608800-127646800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:127608800-127646800	Weak transcription	Lung	lung
18	chr6:127608800-127652800	Weak transcription	Esophagus	oesophagus
19	chr6:127608800-127653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:127608800-127653600	Weak transcription	Pancreas	Pancrea
21	chr6:127608800-127654600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:127608800-127661400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:127608800-127663600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:127608800-127663600	Weak transcription	Gastric	stomach
25	chr6:127609000-127617800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:127609000-127617800	Weak transcription	Left Ventricle	heart
27	chr6:127609000-127618000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:127609000-127621400	Weak transcription	Fetal Heart	heart
29	chr6:127609000-127621600	Weak transcription	Fetal Brain Male	brain
30	chr6:127609000-127621600	Weak transcription	Right Ventricle	heart
31	chr6:127609000-127624800	Weak transcription	Thymus	Thymus
32	chr6:127609000-127630600	Weak transcription	Ovary	ovary
33	chr6:127609000-127646200	Weak transcription	Psoas Muscle	Psoas
34	chr6:127609200-127621400	Weak transcription	Fetal Brain Female	brain
35	chr6:127609200-127621600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr6:127610400-127621000	Weak transcription	NHLF	lung
37	chr6:127610400-127633400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:127610600-127620800	Weak transcription	NHDF-Ad	bronchial
39	chr6:127610600-127624600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:127610800-127627200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr6:127611200-127621200	Weak transcription	NHEK	skin
42	chr6:127611200-127627400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:127611400-127618600	Weak transcription	Primary T cells from cord blood	blood
44	chr6:127611400-127621000	Weak transcription	HUVEC	blood vessel
45	chr6:127611400-127621400	Weak transcription	Placenta	Placenta
46	chr6:127611400-127645600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr6:127611600-127618000	Weak transcription	HepG2	liver
48	chr6:127611600-127624600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr6:127612000-127627400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:127612200-127617800	Weak transcription	Fetal Muscle Leg	muscle

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