Variant report

Variant	rs11154410
Chromosome Location	chr6:127778845-127778846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr6:127778503-127779177	HL-60	blood:	n/a	chr6:127778748-127778761 chr6:127778747-127778760 chr6:127778749-127778758
2	CEBPB	chr6:127778544-127778975	IMR90	lung:	n/a	chr6:127778725-127778738 chr6:127778725-127778736 chr6:127778727-127778738 chr6:127778725-127778738
3	CEBPB	chr6:127778595-127778845	K562	blood:	n/a	chr6:127778725-127778738 chr6:127778725-127778736 chr6:127778727-127778738 chr6:127778725-127778738
4	CEBPB	chr6:127778570-127778894	A549	lung:	n/a	chr6:127778725-127778738 chr6:127778725-127778736 chr6:127778727-127778738 chr6:127778725-127778738
5	CEBPB	chr6:127778550-127778914	Hela-S3	cervix:	n/a	chr6:127778725-127778738 chr6:127778725-127778736 chr6:127778727-127778738 chr6:127778725-127778738
6	FOS	chr6:127778553-127778893	MCF10A-Er-Src	breast:	n/a	chr6:127778788-127778796
7	STAT3	chr6:127778540-127778869	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr6:127778528-127779188	NB4	blood:	n/a	n/a
9	POLR2A	chr6:127778623-127778860	MCF10A-Er-Src	breast:	n/a	n/a
10	MYC	chr6:127778660-127778873	MCF10A-Er-Src	breast:	n/a	n/a
11	POLR2A	chr6:127778482-127779024	HL-60	blood:	n/a	n/a
12	STAT3	chr6:127778626-127778894	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr6:127778540-127778943	MCF10A-Er-Src	breast:	n/a	chr6:127778788-127778796
14	FOS	chr6:127778540-127778878	MCF10A-Er-Src	breast:	n/a	chr6:127778788-127778796
15	POLR2A	chr6:127778537-127778949	SK-N-MC	brain:	n/a	n/a
16	CEBPB	chr6:127778582-127778937	H1-hESC	embryonic stem cell:	n/a	chr6:127778725-127778738 chr6:127778725-127778736 chr6:127778727-127778738 chr6:127778725-127778738
17	MAX	chr6:127778442-127779024	NB4	blood:	n/a	n/a
18	CEBPB	chr6:127778552-127778905	K562	blood:	n/a	chr6:127778725-127778738 chr6:127778725-127778736 chr6:127778727-127778738 chr6:127778725-127778738
19	CEBPB	chr6:127778563-127778913	K562	blood:	n/a	chr6:127778725-127778738 chr6:127778725-127778736 chr6:127778727-127778738 chr6:127778725-127778738
20	CEBPB	chr6:127778378-127778904	HepG2	liver:	n/a	chr6:127778725-127778738 chr6:127778725-127778736 chr6:127778727-127778738 chr6:127778725-127778738
21	RFX5	chr6:127778774-127778858	K562	blood:	n/a	n/a
22	MYC	chr6:127778577-127778932	MCF10A-Er-Src	breast:	n/a	n/a
23	FOS	chr6:127778557-127778911	MCF10A-Er-Src	breast:	n/a	chr6:127778788-127778796

Variant related genes	Relation type
KIAA0408	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10457501	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872319	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11154413	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154414	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11759744	1.00[ASN][1000 genomes]
rs11962618	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11965031	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967682	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12194762	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210879	0.83[EUR][1000 genomes]
rs13193647	1.00[ASN][1000 genomes]
rs13194028	1.00[ASN][1000 genomes]
rs13194280	1.00[CHB][hapmap]
rs13207650	1.00[ASN][1000 genomes]
rs17272843	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34239340	1.00[ASN][1000 genomes]
rs34362686	1.00[ASN][1000 genomes]
rs35237558	1.00[ASN][1000 genomes]
rs36000432	1.00[ASN][1000 genomes]
rs41285272	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321843	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4476846	1.00[CHB][hapmap]
rs6909829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910292	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913216	1.00[CEU][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914921	1.00[ASN][1000 genomes]
rs6932990	1.00[ASN][1000 genomes]
rs6936370	1.00[CEU][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937964	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939662	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7738747	1.00[ASN][1000 genomes]
rs7761452	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9321092	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388581	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401964	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127758200-127780000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:127758200-127794800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:127759800-127779600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:127762000-127780000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:127763800-127780000	Weak transcription	Lung	lung
6	chr6:127764200-127780000	Weak transcription	Brain Anterior Caudate	brain
7	chr6:127764800-127780200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:127768200-127779600	Weak transcription	Brain Substantia Nigra	brain
9	chr6:127768400-127780200	Weak transcription	Brain Angular Gyrus	brain
10	chr6:127768600-127779800	Weak transcription	Aorta	Aorta
11	chr6:127768600-127779800	Weak transcription	Ovary	ovary
12	chr6:127768800-127780200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:127769200-127790800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:127769200-127795400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:127771400-127793000	Weak transcription	A549	lung
16	chr6:127771400-127795000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:127771400-127795800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:127771600-127779200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:127771600-127779600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:127774000-127781200	Active TSS	Stomach Smooth Muscle	stomach
21	chr6:127776000-127779200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:127776600-127780600	Active TSS	Psoas Muscle	Psoas
23	chr6:127776800-127780600	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr6:127776800-127780600	Active TSS	Rectal Smooth Muscle	rectum
25	chr6:127776800-127780600	Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr6:127777000-127779000	Enhancers	Fetal Brain Male	brain
27	chr6:127777400-127779400	Flanking Active TSS	Fetal Lung	lung
28	chr6:127777400-127780800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:127777600-127779600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr6:127777600-127780000	Strong transcription	Brain Germinal Matrix	brain
31	chr6:127777600-127780200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:127777600-127781000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:127777800-127779600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:127777800-127780400	Weak transcription	Fetal Brain Female	brain
35	chr6:127777800-127780600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr6:127778000-127779000	Enhancers	H1 Cell Line	embryonic stem cell
37	chr6:127778000-127779400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr6:127778000-127779400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:127778000-127780000	Enhancers	Osteobl	bone
40	chr6:127778000-127780200	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr6:127778000-127780200	Enhancers	Liver	Liver
42	chr6:127778000-127780200	Enhancers	HSMM	muscle
43	chr6:127778000-127780800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr6:127778200-127780600	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr6:127778400-127779000	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr6:127778400-127779000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:127778400-127779000	Enhancers	NH-A	brain
48	chr6:127778400-127779400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:127778400-127779600	Enhancers	NHDF-Ad	bronchial
50	chr6:127778400-127779800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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