Variant report

Variant	rs6939662
Chromosome Location	chr6:127650257-127650258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:127649276-127651099	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:127644823..127649108-chr6:127649244..127652303,4	K562	blood:
2	chr6:127649642..127651388-chr6:127662419..127666055,3	K562	blood:
3	chr6:127646597..127649451-chr6:127650225..127654504,3	MCF-7	breast:

Variant related genes	Relation type
ECHDC1	TF binding region
ENSG00000093144	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10457501	1.00[ASN][1000 genomes]
rs11154410	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11154413	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11759744	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962618	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965031	1.00[ASN][1000 genomes]
rs12194762	1.00[ASN][1000 genomes]
rs13193647	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194028	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194280	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs13207650	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272843	1.00[ASN][1000 genomes]
rs34239340	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34362686	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237558	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36000432	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41285272	1.00[ASN][1000 genomes]
rs4321843	1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909829	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6910292	1.00[ASN][1000 genomes]
rs6914921	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932990	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937964	1.00[ASN][1000 genomes]
rs7738747	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761452	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772035	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9321092	1.00[ASN][1000 genomes]
rs9388581	1.00[ASN][1000 genomes]
rs9401964	1.00[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127605000-127660800	Weak transcription	Hela-S3	cervix
2	chr6:127608800-127652800	Weak transcription	Esophagus	oesophagus
3	chr6:127608800-127653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:127608800-127653600	Weak transcription	Pancreas	Pancrea
5	chr6:127608800-127654600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:127608800-127661400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:127608800-127663600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:127608800-127663600	Weak transcription	Gastric	stomach
9	chr6:127613000-127661000	Weak transcription	Small Intestine	intestine
10	chr6:127614600-127659200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:127621800-127661000	Weak transcription	Fetal Heart	heart
12	chr6:127622000-127661400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:127622000-127661400	Weak transcription	NHEK	skin
14	chr6:127622800-127661400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:127622800-127662600	Weak transcription	Fetal Brain Male	brain
16	chr6:127625600-127661400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:127627400-127659000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:127628000-127653000	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:127629800-127661200	Weak transcription	A549	lung
20	chr6:127631000-127651400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:127632400-127657600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:127634000-127652200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:127634800-127661400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:127635000-127658000	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:127635400-127653600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:127635800-127659200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:127639000-127652400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:127639600-127652000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr6:127641000-127654000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:127643400-127654200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:127644600-127652200	Strong transcription	HepG2	liver
32	chr6:127644800-127652000	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:127645400-127661400	Weak transcription	Right Ventricle	heart
34	chr6:127645800-127661000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:127646200-127651000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:127646600-127660200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:127647400-127653800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:127647600-127650800	Weak transcription	Aorta	Aorta
39	chr6:127647600-127650800	Weak transcription	Brain Substantia Nigra	brain
40	chr6:127647600-127653400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:127647600-127653600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:127647600-127654000	Weak transcription	Lung	lung
43	chr6:127647600-127654800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:127647600-127660200	Weak transcription	HSMMtube	muscle
45	chr6:127647600-127661000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:127647600-127661400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:127647600-127661400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr6:127647600-127661600	Weak transcription	Brain Germinal Matrix	brain
49	chr6:127647600-127661600	Weak transcription	Fetal Intestine Small	intestine
50	chr6:127647600-127662600	Weak transcription	Brain Angular Gyrus	brain

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