Variant report

Variant	rs34362686
Chromosome Location	chr6:127684439-127684440
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:127663267..127665190-chr6:127682385..127684934,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000093144	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10457501	1.00[ASN][1000 genomes]
rs11154410	1.00[ASN][1000 genomes]
rs11154413	1.00[ASN][1000 genomes]
rs11759744	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962618	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965031	1.00[ASN][1000 genomes]
rs12194762	1.00[ASN][1000 genomes]
rs13193647	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194028	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207650	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272843	1.00[ASN][1000 genomes]
rs34239340	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237558	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36000432	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41285272	1.00[ASN][1000 genomes]
rs4321843	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909829	1.00[ASN][1000 genomes]
rs6910292	1.00[ASN][1000 genomes]
rs6914921	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932990	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937964	1.00[ASN][1000 genomes]
rs6939662	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738747	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761452	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772035	0.86[EUR][1000 genomes]
rs9321092	1.00[ASN][1000 genomes]
rs9388581	1.00[ASN][1000 genomes]
rs9401964	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604641	chr6:127657099-127719062	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv965762	chr6:127669294-127698325	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127666000-127704000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:127666200-127687000	Weak transcription	HSMM	muscle
3	chr6:127672600-127687000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:127679600-127687200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:127680200-127689200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:127682200-127691800	Weak transcription	Fetal Lung	lung
7	chr6:127682800-127686600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:127683200-127685400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:127683600-127687400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:127684200-127684600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:127684200-127685400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:127684400-127687200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links