Variant report

Variant	rs10457501
Chromosome Location	chr6:127812443-127812444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10872319	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11154410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154414	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1154642	1.00[CHB][hapmap]
rs11759744	1.00[ASN][1000 genomes]
rs11962618	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11965031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967682	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12194762	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193647	1.00[ASN][1000 genomes]
rs13194028	1.00[ASN][1000 genomes]
rs13194280	1.00[CHB][hapmap]
rs13207650	1.00[ASN][1000 genomes]
rs1533187	1.00[CHB][hapmap]
rs17272843	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34239340	1.00[ASN][1000 genomes]
rs34362686	1.00[ASN][1000 genomes]
rs35237558	1.00[ASN][1000 genomes]
rs36000432	1.00[ASN][1000 genomes]
rs41285272	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321843	1.00[ASN][1000 genomes]
rs4476846	1.00[CHB][hapmap]
rs6909829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910292	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913216	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6914921	1.00[ASN][1000 genomes]
rs6932990	1.00[ASN][1000 genomes]
rs6936370	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6937964	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939662	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7761452	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7766903	1.00[CHB][hapmap]
rs9321092	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127805800-127813400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:127806400-127815600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:127806600-127813200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:127806600-127815200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:127806800-127829800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:127806800-127829800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:127808400-127826000	Weak transcription	Brain Anterior Caudate	brain
8	chr6:127808400-127834600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:127809000-127834000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:127809200-127830200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:127809400-127820800	Weak transcription	Fetal Brain Male	brain
12	chr6:127809400-127835400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:127810600-127814000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:127810800-127812600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:127810800-127813400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:127810800-127813400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:127811000-127812600	Strong transcription	NH-A	brain
18	chr6:127811000-127813000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:127811400-127812600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:127811400-127813400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr6:127811400-127831400	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:127811600-127812800	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr6:127811600-127813400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:127811600-127831800	Weak transcription	Brain Angular Gyrus	brain
25	chr6:127811800-127812600	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr6:127811800-127814000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:127812000-127817600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:127812200-127812600	Strong transcription	A549	lung
29	chr6:127812200-127813000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:127812200-127813400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:127812200-127814000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:127812200-127814000	Strong transcription	Fetal Brain Female	brain
33	chr6:127812200-127821600	Strong transcription	Brain Germinal Matrix	brain
34	chr6:127812200-127831200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:127812400-127826000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:127812400-127829600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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