Variant report

Variant	rs11967682
Chromosome Location	chr6:127803281-127803282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10457501	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10872319	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154410	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11154413	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11154414	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965031	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12194762	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12210879	0.93[ASN][1000 genomes]
rs17272843	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3734449	0.84[ASN][1000 genomes]
rs3756998	0.84[ASN][1000 genomes]
rs3757000	0.84[ASN][1000 genomes]
rs41285272	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6909829	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6910292	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6913216	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936370	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937964	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9321092	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9388581	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9401964	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127780400-127803800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:127780600-127804400	Weak transcription	Right Atrium	heart
3	chr6:127781000-127804800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:127783800-127805000	Strong transcription	Fetal Brain Female	brain
5	chr6:127786600-127805200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:127786800-127804800	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:127791200-127804800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:127793600-127804400	Weak transcription	A549	lung
9	chr6:127793600-127804400	Weak transcription	HSMMtube	muscle
10	chr6:127793600-127804600	Weak transcription	NHDF-Ad	bronchial
11	chr6:127793600-127805000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:127793800-127804600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:127794600-127804600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:127795200-127804600	Weak transcription	Dnd41	blood
15	chr6:127797200-127804400	Weak transcription	Pancreas	Pancrea
16	chr6:127797200-127804600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:127797200-127804600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:127797200-127807600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:127797400-127804400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:127797400-127804400	Weak transcription	Ovary	ovary
21	chr6:127797400-127804400	Weak transcription	NHLF	lung
22	chr6:127797400-127804600	Weak transcription	Brain Substantia Nigra	brain
23	chr6:127797400-127804600	Weak transcription	Lung	lung
24	chr6:127797400-127805000	Strong transcription	Brain Germinal Matrix	brain
25	chr6:127797400-127805000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr6:127797600-127803600	Weak transcription	Brain Anterior Caudate	brain
27	chr6:127797600-127804400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:127797600-127804600	Weak transcription	Fetal Stomach	stomach
29	chr6:127799000-127804400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:127799000-127805000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:127801000-127803400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:127801000-127804600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:127801600-127803400	Enhancers	Osteobl	bone
34	chr6:127801600-127804000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:127801600-127804000	Genic enhancers	NH-A	brain
36	chr6:127801600-127805000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:127802000-127803400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:127802000-127803800	Enhancers	HUVEC	blood vessel
39	chr6:127802000-127804800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:127802000-127809800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:127802200-127803800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:127802200-127804000	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr6:127802200-127804200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:127802200-127805000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr6:127802200-127806600	Enhancers	Hela-S3	cervix
46	chr6:127802400-127803800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:127802400-127804400	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr6:127802400-127804600	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr6:127802400-127804800	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr6:127802400-127806000	Enhancers	H1 Cell Line	embryonic stem cell

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