Variant report

Variant	rs6936370
Chromosome Location	chr6:127779647-127779648
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr6:127779328-127779730	HepG2	liver:	n/a	chr6:127779510-127779524 chr6:127779509-127779525 chr6:127779507-127779527 chr6:127779506-127779521 chr6:127779505-127779519 chr6:127779506-127779522
2	FOXA1	chr6:127779338-127780297	HepG2	liver:	n/a	chr6:127779626-127779641
3	ARID3A	chr6:127779458-127780129	HepG2	liver:	n/a	n/a
4	MAFK	chr6:127779336-127779685	Hela-S3	cervix:	n/a	chr6:127779510-127779524 chr6:127779509-127779525 chr6:127779507-127779527 chr6:127779506-127779521 chr6:127779505-127779519 chr6:127779506-127779522
5	MAFK	chr6:127779192-127779756	H1-hESC	embryonic stem cell:	n/a	chr6:127779510-127779524 chr6:127779509-127779525 chr6:127779507-127779527 chr6:127779506-127779521 chr6:127779505-127779519 chr6:127779506-127779522
6	FOXA1	chr6:127779370-127780289	HepG2	liver:	n/a	chr6:127779626-127779641
7	MAFF	chr6:127779345-127779680	K562	blood:	n/a	chr6:127779510-127779524 chr6:127779504-127779522
8	MAFK	chr6:127779308-127779706	HepG2	liver:	n/a	chr6:127779510-127779524 chr6:127779509-127779525 chr6:127779507-127779527 chr6:127779506-127779521 chr6:127779505-127779519 chr6:127779506-127779522
9	MAFK	chr6:127779334-127779703	IMR90	lung:	n/a	chr6:127779510-127779524 chr6:127779509-127779525 chr6:127779507-127779527 chr6:127779506-127779521 chr6:127779505-127779519 chr6:127779506-127779522
10	MAFK	chr6:127779349-127779694	K562	blood:	n/a	chr6:127779510-127779524 chr6:127779509-127779525 chr6:127779507-127779527 chr6:127779506-127779521 chr6:127779505-127779519 chr6:127779506-127779522
11	FOXA1	chr6:127779471-127779797	T-47D	breast:	n/a	chr6:127779626-127779641
12	FOXA2	chr6:127779472-127779770	HepG2	liver:	n/a	n/a
13	GATA3	chr6:127779468-127779777	T-47D	breast:	n/a	n/a
14	POLR2A	chr6:127779310-127779696	SK-N-MC	brain:	n/a	n/a
15	GATA3	chr6:127779441-127779749	T-47D	breast:	n/a	n/a
16	MAFF	chr6:127779328-127779729	HepG2	liver:	n/a	chr6:127779510-127779524 chr6:127779504-127779522

Variant related genes	Relation type
KIAA0408	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10457501	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10872319	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154410	1.00[CEU][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11154413	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11154414	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965031	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11967682	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194762	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12210879	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17272843	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3734449	0.84[ASN][1000 genomes]
rs3756998	0.84[ASN][1000 genomes]
rs3757000	0.84[ASN][1000 genomes]
rs41285272	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6909829	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6910292	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6913216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937964	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9321092	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9388581	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9401964	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127758200-127780000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:127758200-127794800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:127762000-127780000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:127763800-127780000	Weak transcription	Lung	lung
5	chr6:127764200-127780000	Weak transcription	Brain Anterior Caudate	brain
6	chr6:127764800-127780200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:127768400-127780200	Weak transcription	Brain Angular Gyrus	brain
8	chr6:127768600-127779800	Weak transcription	Aorta	Aorta
9	chr6:127768600-127779800	Weak transcription	Ovary	ovary
10	chr6:127768800-127780200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:127769200-127790800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:127769200-127795400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:127771400-127793000	Weak transcription	A549	lung
14	chr6:127771400-127795000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:127771400-127795800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:127774000-127781200	Active TSS	Stomach Smooth Muscle	stomach
17	chr6:127776600-127780600	Active TSS	Psoas Muscle	Psoas
18	chr6:127776800-127780600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr6:127776800-127780600	Active TSS	Rectal Smooth Muscle	rectum
20	chr6:127776800-127780600	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr6:127777400-127780800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:127777600-127780000	Strong transcription	Brain Germinal Matrix	brain
23	chr6:127777600-127780200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr6:127777600-127781000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:127777800-127780400	Weak transcription	Fetal Brain Female	brain
26	chr6:127777800-127780600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:127778000-127780000	Enhancers	Osteobl	bone
28	chr6:127778000-127780200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:127778000-127780200	Enhancers	Liver	Liver
30	chr6:127778000-127780200	Enhancers	HSMM	muscle
31	chr6:127778000-127780800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr6:127778200-127780600	Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr6:127778400-127779800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:127778400-127780000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:127778400-127780000	Enhancers	NHLF	lung
36	chr6:127778400-127780600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr6:127778400-127780600	Active TSS	Fetal Muscle Trunk	muscle
38	chr6:127778400-127780600	Active TSS	Right Atrium	heart
39	chr6:127778400-127780800	Enhancers	Brain Hippocampus Middle	brain
40	chr6:127778600-127780600	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr6:127778600-127780800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr6:127778600-127780800	Active TSS	Colon Smooth Muscle	Colon
43	chr6:127778600-127781000	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr6:127778600-127782000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr6:127778800-127780600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:127778800-127780800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:127778800-127781000	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr6:127779000-127780000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr6:127779000-127780000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:127779000-127780000	Weak transcription	Gastric	stomach

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