Variant report

Variant	rs9388581
Chromosome Location	chr6:127815864-127815865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10457501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872319	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11154410	0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154413	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154414	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11759744	1.00[ASN][1000 genomes]
rs11962618	1.00[ASN][1000 genomes]
rs11965031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967682	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12194762	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193647	1.00[ASN][1000 genomes]
rs13194028	1.00[ASN][1000 genomes]
rs13207650	1.00[ASN][1000 genomes]
rs17272843	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34239340	1.00[ASN][1000 genomes]
rs34362686	1.00[ASN][1000 genomes]
rs35237558	1.00[ASN][1000 genomes]
rs36000432	1.00[ASN][1000 genomes]
rs41285272	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321843	1.00[ASN][1000 genomes]
rs6909829	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910292	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913216	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6914921	1.00[ASN][1000 genomes]
rs6932990	1.00[ASN][1000 genomes]
rs6936370	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6937964	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939662	1.00[ASN][1000 genomes]
rs7761452	1.00[ASN][1000 genomes]
rs9321092	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127806800-127829800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:127806800-127829800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:127808400-127826000	Weak transcription	Brain Anterior Caudate	brain
4	chr6:127808400-127834600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:127809000-127834000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:127809200-127830200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:127809400-127820800	Weak transcription	Fetal Brain Male	brain
8	chr6:127809400-127835400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:127811400-127831400	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:127811600-127831800	Weak transcription	Brain Angular Gyrus	brain
11	chr6:127812000-127817600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:127812200-127821600	Strong transcription	Brain Germinal Matrix	brain
13	chr6:127812200-127831200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:127812400-127826000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:127812400-127829600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:127812600-127826000	Weak transcription	A549	lung
17	chr6:127812600-127826200	Weak transcription	NH-A	brain
18	chr6:127812600-127830000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:127812600-127831400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:127812800-127826000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:127813000-127830000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:127813000-127832000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:127813400-127823400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:127813400-127826200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:127813400-127829600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:127813400-127831400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:127814000-127818000	Weak transcription	Fetal Brain Female	brain
28	chr6:127814000-127818400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:127814000-127830800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:127814000-127835600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:127815000-127816200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:127815000-127816200	Enhancers	Dnd41	blood
33	chr6:127815000-127819000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:127815200-127816000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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