Variant report

Variant	rs11962618
Chromosome Location	chr6:127620005-127620006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:127619661-127620024	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:127619869-127620032	ProgFib	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:127597047..127599169-chr6:127618284..127620186,2	K562	blood:
2	chr6:127613981..127617001-chr6:127617668..127620592,4	K562	blood:

Variant related genes	Relation type
ECHDC1	TF binding region
ENSG00000093144	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10457501	1.00[ASN][1000 genomes]
rs11154410	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11154413	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11759744	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965031	1.00[ASN][1000 genomes]
rs12194762	1.00[ASN][1000 genomes]
rs13193647	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194028	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194280	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs13207650	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272843	1.00[ASN][1000 genomes]
rs2800707	1.00[CHB][hapmap]
rs2875981	0.85[CEU][hapmap]
rs34239340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34362686	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237558	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36000432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41285272	1.00[ASN][1000 genomes]
rs4321843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909829	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6910292	1.00[ASN][1000 genomes]
rs6914921	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932990	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937964	1.00[ASN][1000 genomes]
rs6939662	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738747	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772035	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9321092	1.00[ASN][1000 genomes]
rs9388581	1.00[ASN][1000 genomes]
rs9401964	1.00[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127601600-127621800	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr6:127605000-127660800	Weak transcription	Hela-S3	cervix
3	chr6:127608600-127625000	Weak transcription	Colonic Mucosa	Colon
4	chr6:127608800-127620800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:127608800-127621000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:127608800-127621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:127608800-127621800	Weak transcription	Fetal Stomach	stomach
8	chr6:127608800-127628000	Weak transcription	Spleen	Spleen
9	chr6:127608800-127633400	Weak transcription	Fetal Kidney	kidney
10	chr6:127608800-127634400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:127608800-127635200	Weak transcription	K562	blood
12	chr6:127608800-127646800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:127608800-127646800	Weak transcription	Lung	lung
14	chr6:127608800-127652800	Weak transcription	Esophagus	oesophagus
15	chr6:127608800-127653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:127608800-127653600	Weak transcription	Pancreas	Pancrea
17	chr6:127608800-127654600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:127608800-127661400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:127608800-127663600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:127608800-127663600	Weak transcription	Gastric	stomach
21	chr6:127609000-127621400	Weak transcription	Fetal Heart	heart
22	chr6:127609000-127621600	Weak transcription	Fetal Brain Male	brain
23	chr6:127609000-127621600	Weak transcription	Right Ventricle	heart
24	chr6:127609000-127624800	Weak transcription	Thymus	Thymus
25	chr6:127609000-127630600	Weak transcription	Ovary	ovary
26	chr6:127609000-127646200	Weak transcription	Psoas Muscle	Psoas
27	chr6:127609200-127621400	Weak transcription	Fetal Brain Female	brain
28	chr6:127609200-127621600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:127610400-127621000	Weak transcription	NHLF	lung
30	chr6:127610400-127633400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:127610600-127620800	Weak transcription	NHDF-Ad	bronchial
32	chr6:127610600-127624600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:127610800-127627200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:127611200-127621200	Weak transcription	NHEK	skin
35	chr6:127611200-127627400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:127611400-127621000	Weak transcription	HUVEC	blood vessel
37	chr6:127611400-127621400	Weak transcription	Placenta	Placenta
38	chr6:127611400-127645600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:127611600-127624600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr6:127612000-127627400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:127612200-127621200	Weak transcription	A549	lung
42	chr6:127612200-127621600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:127612200-127637600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:127612400-127620200	Weak transcription	Fetal Thymus	thymus
45	chr6:127612400-127621200	Weak transcription	HMEC	breast
46	chr6:127612600-127621400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:127612600-127621400	Weak transcription	HSMMtube	muscle
48	chr6:127612600-127629000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:127612800-127629000	Weak transcription	Brain Anterior Caudate	brain
50	chr6:127612800-127630800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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