Variant report

Variant	rs2875981
Chromosome Location	chr6:127693987-127693988
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:127661647..127664364-chr6:127693030..127695790,2	K562	blood:
2	chr6:127661647..127664491-chr6:127692305..127695790,3	K562	blood:

Variant related genes	Relation type
ENSG00000093144	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11154395	0.85[AFR][1000 genomes]
rs11154396	0.86[AFR][1000 genomes]
rs11154397	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11154398	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11961994	0.81[ASW][hapmap];0.97[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11962618	0.85[CEU][hapmap]
rs12199451	0.81[ASW][hapmap];0.97[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs12210968	1.00[YRI][hapmap]
rs12212752	0.81[AFR][1000 genomes]
rs12529077	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs13192350	0.82[AFR][1000 genomes]
rs13215850	0.93[AFR][1000 genomes]
rs17054536	0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2057224	0.83[AFR][1000 genomes]
rs3756993	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs3798856	0.84[ASN][1000 genomes]
rs3798859	0.81[ASW][hapmap];0.95[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs3823043	0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs41285264	0.84[ASN][1000 genomes]
rs4321843	0.85[CEU][hapmap];0.84[MEX][hapmap]
rs56155196	0.81[ASN][1000 genomes]
rs56412751	0.92[ASN][1000 genomes]
rs59930939	0.84[ASN][1000 genomes]
rs60886957	0.92[ASN][1000 genomes]
rs61498440	0.84[ASN][1000 genomes]
rs6683	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6909390	0.84[ASN][1000 genomes]
rs6933893	0.92[AFR][1000 genomes]
rs6937599	0.92[ASN][1000 genomes]
rs72961030	0.81[ASN][1000 genomes]
rs72961049	0.84[ASN][1000 genomes]
rs72961060	0.84[ASN][1000 genomes]
rs72961071	0.84[ASN][1000 genomes]
rs72961085	0.84[ASN][1000 genomes]
rs72963107	0.92[ASN][1000 genomes]
rs72964327	0.84[ASN][1000 genomes]
rs7761452	0.85[CEU][hapmap];0.84[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604641	chr6:127657099-127719062	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv965762	chr6:127669294-127698325	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127666000-127704000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:127688400-127697800	Weak transcription	HSMM	muscle
3	chr6:127689800-127694600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:127691800-127695600	Weak transcription	Ovary	ovary
5	chr6:127692600-127712200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:127693200-127694600	Weak transcription	Fetal Lung	lung
7	chr6:127693400-127698000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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