Variant report

Variant	rs72961049
Chromosome Location	chr6:127602258-127602259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:127586756..127589878-chr6:127599119..127602914,4	MCF-7	breast:
2	chr6:127597455..127599402-chr6:127601382..127603939,2	MCF-7	breast:
3	chr6:127596682..127600965-chr6:127601180..127603432,5	K562	blood:
4	chr6:127600287..127602355-chr6:127610895..127612469,2	MCF-7	breast:
5	chr6:127597627..127599604-chr6:127601180..127604567,3	K562	blood:
6	chr6:127602245..127604688-chr6:127606753..127609649,2	K562	blood:
7	chr6:127592830..127595809-chr6:127600762..127603606,3	MCF-7	breast:
8	chr6:127586710..127590748-chr6:127601516..127606333,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000118518	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17054536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2875981	0.84[ASN][1000 genomes]
rs3798856	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823043	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41285264	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56155196	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56412751	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59930939	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60886957	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61498440	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909390	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6937599	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72961030	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961060	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963107	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72964327	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127589200-127602600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:127589400-127607800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:127589600-127607800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:127589800-127603800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:127589800-127612000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:127590400-127602600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:127590400-127606400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:127590400-127607800	Weak transcription	Thymus	Thymus
9	chr6:127590600-127602400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:127590600-127602400	Weak transcription	Fetal Intestine Large	intestine
11	chr6:127590600-127602600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:127590600-127607800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:127590800-127602400	Weak transcription	NHLF	lung
14	chr6:127590800-127602600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:127590800-127602600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:127590800-127602600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:127590800-127602600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:127590800-127602600	Weak transcription	HSMMtube	muscle
19	chr6:127590800-127602600	Weak transcription	Osteobl	bone
20	chr6:127590800-127608200	Weak transcription	A549	lung
21	chr6:127591000-127602400	Weak transcription	Fetal Kidney	kidney
22	chr6:127591000-127602600	Weak transcription	Primary B cells from cord blood	blood
23	chr6:127591000-127602600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:127591000-127602800	Weak transcription	Brain Germinal Matrix	brain
25	chr6:127591000-127603000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:127591400-127602600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:127591400-127603000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:127591400-127606800	Weak transcription	Fetal Brain Male	brain
29	chr6:127591600-127602800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr6:127591600-127607800	Weak transcription	Fetal Heart	heart
31	chr6:127591800-127606800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:127592600-127602800	Weak transcription	Fetal Brain Female	brain
33	chr6:127593800-127602600	Weak transcription	Fetal Lung	lung
34	chr6:127594000-127603000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:127594200-127602400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:127594400-127606800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr6:127595400-127607800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:127596000-127602600	Weak transcription	Lung	lung
39	chr6:127596000-127607800	Weak transcription	Pancreas	Pancrea
40	chr6:127596200-127607800	Weak transcription	Esophagus	oesophagus
41	chr6:127596400-127607800	Weak transcription	Aorta	Aorta
42	chr6:127596400-127607800	Weak transcription	Right Ventricle	heart
43	chr6:127596600-127603200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:127597400-127602600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr6:127597400-127603400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:127597400-127611600	Weak transcription	Stomach Mucosa	stomach
47	chr6:127597600-127602400	Weak transcription	Fetal Thymus	thymus
48	chr6:127597600-127602800	Weak transcription	Brain Angular Gyrus	brain
49	chr6:127597600-127602800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:127597600-127603000	Weak transcription	Ovary	ovary

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