Variant report

Variant	rs41285264
Chromosome Location	chr6:127609558-127609559
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:127608699..127610786-chr6:127657658..127660548,2	K562	blood:
2	chr6:127587071..127590224-chr6:127606752..127609635,3	MCF-7	breast:
3	chr6:127591724..127593793-chr6:127607677..127610400,2	MCF-7	breast:
4	chr6:127593364..127596247-chr6:127607047..127609667,2	K562	blood:
5	chr6:127602245..127604688-chr6:127606753..127609649,2	K562	blood:
6	chr6:127585676..127587796-chr6:127608020..127609818,2	K562	blood:

Variant related genes	Relation type
ENSG00000118518	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17054536	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2875981	0.84[ASN][1000 genomes]
rs3798856	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823043	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56155196	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56412751	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs59930939	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60886957	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs61498440	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909390	0.83[ASN][1000 genomes]
rs6937599	0.91[ASN][1000 genomes]
rs72961030	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961049	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961060	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961071	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961085	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963107	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72964327	0.83[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127589800-127612000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:127597400-127611600	Weak transcription	Stomach Mucosa	stomach
3	chr6:127600400-127618000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:127601000-127619000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:127601200-127610000	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:127601200-127611400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:127601200-127618000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:127601400-127609600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:127601400-127610000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:127601400-127610800	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:127601400-127610800	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:127601400-127610800	Strong transcription	Primary hematopoietic stem cells	blood
13	chr6:127601400-127611400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:127601400-127611400	Strong transcription	Placenta	Placenta
15	chr6:127601400-127612600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:127601600-127611000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr6:127601600-127611600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:127601600-127621800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr6:127601800-127610600	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr6:127601800-127611200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:127601800-127611600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:127601800-127612200	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:127602200-127612200	Strong transcription	HSMM	muscle
24	chr6:127602400-127611200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:127602600-127609800	Strong transcription	Osteobl	bone
26	chr6:127602600-127611000	Strong transcription	Fetal Lung	lung
27	chr6:127602600-127612000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:127602600-127612200	Strong transcription	Primary B cells from cord blood	blood
29	chr6:127604000-127618400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:127605000-127660800	Weak transcription	Hela-S3	cervix
31	chr6:127606200-127612000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:127606400-127612400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:127606600-127612600	Strong transcription	Dnd41	blood
34	chr6:127606800-127610000	Strong transcription	Adipose Nuclei	Adipose
35	chr6:127606800-127610400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:127606800-127610400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:127606800-127610600	Strong transcription	HepG2	liver
38	chr6:127606800-127610800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:127606800-127611200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr6:127607000-127611600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr6:127607200-127610600	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr6:127607200-127611200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:127607200-127611400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:127607200-127611400	Strong transcription	HUVEC	blood vessel
45	chr6:127607200-127612000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:127607200-127612400	Strong transcription	Fetal Thymus	thymus
47	chr6:127607400-127609600	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr6:127607800-127610000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:127608200-127610000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:127608200-127610400	Genic enhancers	Liver	Liver

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