Variant report

Variant	rs1550992
Chromosome Location	chr2:33931075-33931076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1448556	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1868348	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900775	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55826931	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6543736	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6543738	0.83[EUR][1000 genomes]
rs6543739	0.83[EUR][1000 genomes]
rs6715757	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7562867	0.90[ASN][1000 genomes]
rs7574123	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs7581496	0.97[ASN][1000 genomes]
rs7585657	0.92[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs7588769	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1550992	TTC27	cis	cerebellum	SCAN
rs1550992	FAM98A	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33929000-33931800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:33930000-33932000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:33930000-33937400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:33930200-33937000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:33930200-33937000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:33930400-33937000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:33930600-33935000	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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