Variant report

Variant	rs7581496
Chromosome Location	chr2:33930328-33930329
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1448556	0.94[ASN][1000 genomes]
rs1550992	0.97[ASN][1000 genomes]
rs1868348	0.96[ASN][1000 genomes]
rs1900775	0.95[ASN][1000 genomes]
rs55826931	0.93[ASN][1000 genomes]
rs6543736	0.94[ASN][1000 genomes]
rs6715757	0.97[ASN][1000 genomes]
rs7562867	0.87[ASN][1000 genomes]
rs7574123	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2073344	chr2:33930328-33930329	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33928800-33930400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:33929000-33930400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:33929000-33931800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:33929200-33930400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:33929200-33930600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:33929400-33930400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:33930000-33930600	Enhancers	HUVEC	blood vessel
8	chr2:33930000-33932000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:33930000-33937400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:33930200-33937000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:33930200-33937000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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