Variant report

Variant	rs7562867
Chromosome Location	chr2:33932923-33932924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1448556	0.85[ASN][1000 genomes]
rs1550992	0.90[ASN][1000 genomes]
rs1868348	0.88[ASN][1000 genomes]
rs1900775	0.87[ASN][1000 genomes]
rs55826931	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6543736	0.87[ASN][1000 genomes]
rs6715757	0.89[ASN][1000 genomes]
rs7574123	0.90[ASN][1000 genomes]
rs7581496	0.87[ASN][1000 genomes]
rs7585657	0.85[EUR][1000 genomes]
rs7588769	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33930000-33937400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:33930200-33937000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:33930200-33937000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:33930400-33937000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:33930600-33935000	Weak transcription	HUVEC	blood vessel
6	chr2:33932000-33934200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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