Variant report

Variant	rs1553451
Chromosome Location	chr1:114535695-114535696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1553453	1.00[AMR][1000 genomes]
rs2938322	1.00[AMR][1000 genomes]
rs2938326	1.00[AMR][1000 genomes]
rs3006976	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35349710	1.00[AMR][1000 genomes]
rs7553477	1.00[AMR][1000 genomes]
rs905598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv2754686	chr1:114531958-114602958	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114528000-114536600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:114528200-114535800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:114528200-114540800	Weak transcription	Fetal Lung	lung
4	chr1:114530000-114536200	Weak transcription	Fetal Stomach	stomach
5	chr1:114532200-114535800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:114535200-114536200	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:114535400-114536000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:114535600-114536000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:114535600-114536600	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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