Variant report

Variant	rs35349710
Chromosome Location	chr1:114513136-114513137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114507526..114510965-chr1:114511227..114514003,3	MCF-7	breast:
2	chr1:114512401..114515204-chr1:114516877..114520311,4	K562	blood:
3	chr1:114507385..114510097-chr1:114511069..114514581,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1553451	1.00[AMR][1000 genomes]
rs1553453	1.00[AMR][1000 genomes]
rs2938322	1.00[AMR][1000 genomes]
rs2938326	1.00[AMR][1000 genomes]
rs3006976	1.00[AMR][1000 genomes]
rs7553477	1.00[AMR][1000 genomes]
rs905598	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114479000-114517600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:114492800-114518600	Strong transcription	Dnd41	blood
3	chr1:114493400-114517600	Strong transcription	Fetal Thymus	thymus
4	chr1:114495400-114517400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:114495800-114516800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:114495800-114518200	Strong transcription	Primary B cells from peripheral blood	blood
7	chr1:114496000-114517000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:114496400-114516000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:114496400-114516400	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr1:114496400-114517000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:114496400-114517200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr1:114496400-114517400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr1:114496400-114517600	Strong transcription	Duodenum Mucosa	Duodenum
14	chr1:114496400-114518200	Strong transcription	K562	blood
15	chr1:114496400-114519400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr1:114496600-114518800	Strong transcription	Primary B cells from cord blood	blood
17	chr1:114497000-114516400	Strong transcription	Fetal Intestine Large	intestine
18	chr1:114497000-114517000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:114497200-114516400	Strong transcription	Primary hematopoietic stem cells	blood
20	chr1:114497200-114516400	Strong transcription	GM12878-XiMat	blood
21	chr1:114497600-114517600	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr1:114497800-114517400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr1:114498000-114517400	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr1:114498800-114518200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr1:114500000-114517600	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr1:114501800-114516800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr1:114503800-114517400	Strong transcription	Placenta	Placenta
28	chr1:114503800-114518600	Strong transcription	Brain Germinal Matrix	brain
29	chr1:114504000-114514800	Strong transcription	Hela-S3	cervix
30	chr1:114504200-114516800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:114504400-114517000	Strong transcription	Osteobl	bone
32	chr1:114504600-114517600	Strong transcription	HSMM	muscle
33	chr1:114504600-114517800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
34	chr1:114504600-114519000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr1:114504800-114516200	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr1:114504800-114516200	Strong transcription	NHLF	lung
37	chr1:114504800-114516400	Strong transcription	Fetal Lung	lung
38	chr1:114504800-114516400	Strong transcription	Fetal Muscle Leg	muscle
39	chr1:114504800-114516400	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr1:114504800-114516600	Strong transcription	Fetal Muscle Trunk	muscle
41	chr1:114504800-114517400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr1:114504800-114517600	Strong transcription	Primary T cells from cord blood	blood
43	chr1:114504800-114517600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr1:114504800-114517600	Strong transcription	NHDF-Ad	bronchial
45	chr1:114504800-114517800	Strong transcription	Liver	Liver
46	chr1:114504800-114518400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:114504800-114519400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr1:114505000-114516400	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr1:114506000-114517800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr1:114506600-114517800	Strong transcription	Primary T cells fromperipheralblood	blood

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