Variant report

Variant	rs2938326
Chromosome Location	chr1:114550778-114550779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:114546630..114549912-chr1:114550088..114553437,4	MCF-7	breast:
2	chr1:114550074..114553212-chr1:114560226..114563483,4	MCF-7	breast:
3	chr1:114525379..114527622-chr1:114550008..114552290,2	MCF-7	breast:
4	chr1:114544161..114545963-chr1:114548687..114551094,2	MCF-7	breast:
5	chr1:114546364..114550367-chr1:114550390..114555029,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OLFML3-3	chr1:114550572-114550830	NONHSAT005349

No data

Variant related genes	Relation type
ENSG00000270780	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1553451	1.00[AMR][1000 genomes]
rs1553453	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938322	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3006976	1.00[AMR][1000 genomes]
rs35349710	1.00[AMR][1000 genomes]
rs7553477	1.00[AMR][1000 genomes]
rs905598	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv2754686	chr1:114531958-114602958	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114545800-114551000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:114545800-114551000	Weak transcription	HSMMtube	muscle
3	chr1:114545800-114562600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:114546200-114551000	Weak transcription	HSMM	muscle
5	chr1:114546200-114557600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:114546800-114553600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:114546800-114554600	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:114547000-114551200	Weak transcription	Fetal Kidney	kidney
9	chr1:114547400-114568600	Weak transcription	Right Atrium	heart
10	chr1:114547800-114550800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:114549800-114551800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr1:114549800-114552400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr1:114550000-114551800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr1:114550200-114551800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:114550200-114551800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr1:114550400-114550800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:114550400-114551400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr1:114550400-114551800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:114550400-114552000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr1:114550600-114551400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr1:114550600-114552000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr1:114550600-114552600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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