Variant report

Variant	rs1556725
Chromosome Location	chr6:76234068-76234069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:75993328..75995999-chr6:76232797..76235575,2	MCF-7	breast:
2	chr6:76160176..76162378-chr6:76232969..76235854,2	MCF-7	breast:
3	chr6:76228629..76230410-chr6:76233743..76235799,2	K562	blood:
4	chr6:76218487..76221203-chr6:76231710..76234435,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225793	Chromatin interaction
ENSG00000112697	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2152531	1.00[AMR][1000 genomes]
rs2703705	0.82[ASW][hapmap];1.00[AMR][1000 genomes]
rs276681	1.00[AMR][1000 genomes]
rs2808184	1.00[AMR][1000 genomes]
rs2842532	1.00[AMR][1000 genomes]
rs2951914	1.00[AMR][1000 genomes]
rs2951915	1.00[AMR][1000 genomes]
rs2951923	1.00[AMR][1000 genomes]
rs2998368	1.00[AMR][1000 genomes]
rs2998386	0.82[ASW][hapmap]
rs494761	1.00[AMR][1000 genomes]
rs526908	1.00[AMR][1000 genomes]
rs557414	1.00[AMR][1000 genomes]
rs605965	1.00[AMR][1000 genomes]
rs6453831	1.00[AMR][1000 genomes]
rs775077	1.00[AMR][1000 genomes]
rs7769081	1.00[AMR][1000 genomes]
rs9350588	1.00[AMR][1000 genomes]
rs9360912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447492	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024079	chr6:75848556-76238519	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv1022428	chr6:76023118-76575620	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
5	nsv538312	chr6:76023118-76575620	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
6	nsv1032245	chr6:76045537-76545703	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
7	nsv538313	chr6:76045537-76545703	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
8	nsv1019328	chr6:76154751-76604197	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv538314	chr6:76154751-76604197	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv603770	chr6:76200514-76277296	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76233400-76234200	Enhancers	Hela-S3	cervix
2	chr6:76233400-76234200	Enhancers	NHLF	lung
3	chr6:76233600-76234200	Enhancers	HUVEC	blood vessel
4	chr6:76233800-76234200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:76233800-76234200	Enhancers	NHDF-Ad	bronchial
6	chr6:76233800-76234800	Enhancers	HepG2	liver
7	chr6:76234000-76234200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:76234000-76234200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:76234000-76234200	Enhancers	Fetal Heart	heart
10	chr6:76234000-76234200	Enhancers	Fetal Stomach	stomach
11	chr6:76234000-76234200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:76234000-76234200	Enhancers	Rectal Smooth Muscle	rectum
13	chr6:76234000-76234200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:76234000-76234200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:76234000-76234200	Enhancers	Osteobl	bone
16	chr6:76234000-76234400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:76234000-76234400	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr6:76234000-76234600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:76234000-76234600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:76234000-76234600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:76234000-76234600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:76234000-76234600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:76234000-76234600	Enhancers	Adipose Nuclei	Adipose
24	chr6:76234000-76234600	Enhancers	Liver	Liver
25	chr6:76234000-76234600	Active TSS	Colon Smooth Muscle	Colon
26	chr6:76234000-76234600	Flanking Active TSS	Fetal Lung	lung
27	chr6:76234000-76234800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr6:76234000-76234800	Enhancers	Fetal Kidney	kidney
29	chr6:76234000-76234800	Active TSS	Stomach Smooth Muscle	stomach
30	chr6:76234000-76234800	Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links