Variant report

Variant	rs1561110
Chromosome Location	chr1:224887955-224887956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10799277	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs10915694	0.86[CEU][hapmap];0.80[GIH][hapmap];0.90[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10915698	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs10915699	0.88[ASW][hapmap];0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs13374487	0.81[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1369846	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1369847	0.81[CEU][hapmap]
rs1436171	0.88[ASW][hapmap];0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1465768	0.88[ASW][hapmap];0.87[CEU][hapmap]
rs1965776	0.87[ASW][hapmap];0.95[CEU][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1965777	0.84[EUR][1000 genomes]
rs2405525	0.84[EUR][1000 genomes]
rs2897161	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs56881651	0.86[EUR][1000 genomes]
rs61676104	0.86[EUR][1000 genomes]
rs7511897	0.91[CEU][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7542431	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7542995	0.86[CEU][hapmap];0.90[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs873594	0.88[ASW][hapmap];0.87[CEU][hapmap];0.83[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
2	chr1:224875600-224888400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:224877600-224891600	Weak transcription	Dnd41	blood
4	chr1:224881400-224895400	Weak transcription	Ovary	ovary
5	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
6	chr1:224885200-224891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:224885600-224895200	Weak transcription	NH-A	brain
8	chr1:224885800-224891200	Weak transcription	NHLF	lung
9	chr1:224885800-224891400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:224885800-224895200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:224886000-224888000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:224886000-224890200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:224886200-224888400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:224886200-224891600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:224886200-224891600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:224887000-224888400	Weak transcription	NHDF-Ad	bronchial
17	chr1:224887400-224889000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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