Variant report

Variant	rs2405525
Chromosome Location	chr1:224891568-224891569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224890636..224894116-chr1:224907021..224910162,3	MCF-7	breast:
2	chr1:224882945..224885447-chr1:224889455..224891684,2	K562	blood:
3	chr1:224884331..224887289-chr1:224890034..224891821,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10799277	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10799590	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10915684	0.85[EUR][1000 genomes]
rs10915694	0.81[EUR][1000 genomes]
rs10915696	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10915698	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10915699	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12092438	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12130499	0.86[EUR][1000 genomes]
rs12132665	0.87[EUR][1000 genomes]
rs1369846	0.86[EUR][1000 genomes]
rs1369847	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1436169	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1436171	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1465768	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1561110	0.84[EUR][1000 genomes]
rs1603917	0.84[EUR][1000 genomes]
rs1603918	0.84[EUR][1000 genomes]
rs169888	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1965776	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1965777	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2648746	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2897161	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2936575	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs298732	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs298733	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs298734	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs298735	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs298738	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs298739	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2993124	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3012185	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4147293	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4653402	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4653404	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4653591	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4653592	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6667034	0.84[EUR][1000 genomes]
rs6686604	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6686633	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67817586	0.86[EUR][1000 genomes]
rs713098	0.86[EUR][1000 genomes]
rs7511897	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7521396	0.85[EUR][1000 genomes]
rs7535296	0.85[EUR][1000 genomes]
rs7537973	0.84[EUR][1000 genomes]
rs7542431	0.81[EUR][1000 genomes]
rs7542995	0.80[EUR][1000 genomes]
rs7543218	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7544312	0.87[EUR][1000 genomes]
rs7545574	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs873594	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
2	chr1:224877600-224891600	Weak transcription	Dnd41	blood
3	chr1:224881400-224895400	Weak transcription	Ovary	ovary
4	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
5	chr1:224885600-224895200	Weak transcription	NH-A	brain
6	chr1:224885800-224895200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:224886200-224891600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:224886200-224891600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:224888400-224894200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:224888800-224895600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:224889000-224892600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:224889200-224891600	Weak transcription	NHDF-Ad	bronchial
13	chr1:224889400-224891600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:224889800-224895600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:224890800-224892200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:224890800-224892200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr1:224890800-224892400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr1:224891000-224892000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr1:224891000-224892600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr1:224891200-224892000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr1:224891200-224892000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:224891200-224892000	Strong transcription	NHLF	lung
23	chr1:224891400-224892000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:224891400-224892400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr1:224891400-224892400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr1:224891400-224893200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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