Variant report

Variant	rs1965776
Chromosome Location	chr1:224890520-224890521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224885130..224887925-chr1:224889858..224891472,2	MCF-7	breast:
2	chr1:224882945..224885447-chr1:224889455..224891684,2	K562	blood:
3	chr1:224884331..224887289-chr1:224890034..224891821,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10799277	0.83[CEU][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10915694	0.91[MEX][hapmap];0.89[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10915698	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs10915699	0.88[ASW][hapmap];0.84[CEU][hapmap];0.81[GIH][hapmap];0.96[LWK][hapmap];0.80[MEX][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13374487	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1369846	0.94[ASW][hapmap];0.95[CEU][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1436171	0.88[ASW][hapmap];0.84[CEU][hapmap];0.96[LWK][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1465768	0.88[ASW][hapmap];0.84[CEU][hapmap];0.81[GIH][hapmap];0.96[LWK][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1561110	0.87[ASW][hapmap];0.95[CEU][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1965777	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2405525	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2897161	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs56881651	0.86[EUR][1000 genomes]
rs61676104	0.86[EUR][1000 genomes]
rs7511897	0.86[EUR][1000 genomes]
rs7542431	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7542995	0.91[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs873594	0.88[ASW][hapmap];0.84[CEU][hapmap];0.96[LWK][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1965776	RAB3GAP2	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
2	chr1:224877600-224891600	Weak transcription	Dnd41	blood
3	chr1:224881400-224895400	Weak transcription	Ovary	ovary
4	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
5	chr1:224885200-224891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:224885600-224895200	Weak transcription	NH-A	brain
7	chr1:224885800-224891200	Weak transcription	NHLF	lung
8	chr1:224885800-224891400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:224885800-224895200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:224886200-224891600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:224886200-224891600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:224888400-224894200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:224888800-224891400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:224888800-224895600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:224889000-224892600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:224889200-224890800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr1:224889200-224891400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr1:224889200-224891600	Weak transcription	NHDF-Ad	bronchial
19	chr1:224889400-224891600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:224889800-224895600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:224890000-224891200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:224890400-224890600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr1:224890400-224890600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr1:224890400-224890800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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