Variant report

Variant	rs1562612
Chromosome Location	chr8:59817068-59817069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10091451	0.83[AMR][1000 genomes]
rs10093993	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10095333	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10098750	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10105665	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10108037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10109566	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10112089	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12114218	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12115074	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261666	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13263261	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13268621	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13271523	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1448541	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2326213	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4737525	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4738729	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4738730	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4738731	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4738732	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4738733	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4738734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4738735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55871839	1.00[ASN][1000 genomes]
rs6471756	0.88[CEU][hapmap]
rs6471757	0.84[GIH][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes]
rs6651298	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6988143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7000535	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7002967	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004274	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7829715	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9298002	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
2	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
5	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:59812000-59818000	Weak transcription	Primary T cells from cord blood	blood
9	chr8:59812000-59819800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr8:59812000-59823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:59813600-59817400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:59815000-59820800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:59815200-59817400	Weak transcription	Dnd41	blood
14	chr8:59815600-59818000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:59815800-59818800	Weak transcription	Fetal Brain Female	brain
16	chr8:59816000-59823600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:59816000-59825800	Weak transcription	Fetal Kidney	kidney
18	chr8:59816000-59840000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:59816200-59818800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:59816200-59823400	Weak transcription	Osteobl	bone
21	chr8:59816200-59839800	Weak transcription	Fetal Stomach	stomach
22	chr8:59816400-59818000	Weak transcription	Brain Germinal Matrix	brain
23	chr8:59816400-59818600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr8:59816400-59819200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:59816400-59823600	Weak transcription	Colon Smooth Muscle	Colon
26	chr8:59816400-59840200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:59816800-59817200	Weak transcription	Fetal Brain Male	brain
28	chr8:59816800-59818600	Strong transcription	Fetal Thymus	thymus
29	chr8:59817000-59818600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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