Variant report

Variant	rs4738733
Chromosome Location	chr8:59813760-59813761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10091451	0.83[AMR][1000 genomes]
rs10093993	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095333	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10098750	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105665	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10108037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109566	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10112089	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114218	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12115074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13261666	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13262230	0.81[EUR][1000 genomes]
rs13263261	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13268621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271523	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1349113	0.81[EUR][1000 genomes]
rs1448541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562612	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2044643	0.81[EUR][1000 genomes]
rs2326213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737525	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4738729	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4738730	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4738731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4738735	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55871839	0.93[ASN][1000 genomes]
rs6471756	0.89[CEU][hapmap]
rs6471757	0.86[AMR][1000 genomes]
rs6651298	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6988143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7000535	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7002967	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7004274	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829715	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9298002	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526468	chr8:59799820-59813809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
2	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:59805000-59815200	Weak transcription	Fetal Heart	heart
4	chr8:59805200-59815600	Weak transcription	Fetal Stomach	stomach
5	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:59806000-59814000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:59806400-59815400	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:59808600-59815200	Weak transcription	Osteobl	bone
9	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
10	chr8:59810200-59814800	Weak transcription	Brain Germinal Matrix	brain
11	chr8:59811400-59813800	Weak transcription	Fetal Brain Male	brain
12	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:59811600-59813800	Weak transcription	Fetal Brain Female	brain
14	chr8:59811600-59815200	Weak transcription	Fetal Lung	lung
15	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr8:59811800-59814000	Weak transcription	Dnd41	blood
17	chr8:59811800-59815400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:59811800-59815600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr8:59811800-59815600	Weak transcription	HUVEC	blood vessel
20	chr8:59811800-59815600	Weak transcription	NHDF-Ad	bronchial
21	chr8:59811800-59816800	Weak transcription	Fetal Thymus	thymus
22	chr8:59811800-59817000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:59812000-59818000	Weak transcription	Primary T cells from cord blood	blood
25	chr8:59812000-59819800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr8:59812000-59823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:59812200-59814000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:59812800-59815600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:59813200-59815000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:59813400-59815200	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr8:59813600-59817400	Enhancers	Cortex derived primary cultured neurospheres	brain

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