Variant report

Variant	rs4738730
Chromosome Location	chr8:59808935-59808936
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10091451	0.83[AMR][1000 genomes]
rs10093993	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095333	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10098750	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105665	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10108037	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109566	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10112089	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12114218	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12115074	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13261666	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13262230	0.81[EUR][1000 genomes]
rs13263261	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13268621	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13271523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1349113	0.81[EUR][1000 genomes]
rs1448541	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1562612	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2044643	0.81[EUR][1000 genomes]
rs2326213	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4737525	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4738729	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4738731	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4738732	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4738733	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4738734	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4738735	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6471756	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6471757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6651298	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6988143	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7000535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7002967	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7004274	0.86[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7829715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9298002	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv890940	chr8:59785412-59809785	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv526468	chr8:59799820-59813809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:59790800-59811200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:59791400-59811000	Weak transcription	Brain Angular Gyrus	brain
4	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
5	chr8:59794800-59811000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:59800600-59809800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:59800800-59809600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:59800800-59810600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:59800800-59811000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:59801400-59811000	Weak transcription	Primary T cells from cord blood	blood
11	chr8:59802200-59810800	Weak transcription	HUVEC	blood vessel
12	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:59804200-59811000	Weak transcription	Gastric	stomach
14	chr8:59805000-59812200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:59805000-59815200	Weak transcription	Fetal Heart	heart
16	chr8:59805200-59815600	Weak transcription	Fetal Stomach	stomach
17	chr8:59805400-59810600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr8:59805600-59811000	Weak transcription	NHDF-Ad	bronchial
20	chr8:59806000-59814000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:59806400-59815400	Weak transcription	Colon Smooth Muscle	Colon
22	chr8:59807000-59810000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr8:59808000-59809200	Strong transcription	Dnd41	blood
24	chr8:59808200-59809000	Strong transcription	Thymus	Thymus
25	chr8:59808200-59810200	Strong transcription	Fetal Thymus	thymus
26	chr8:59808400-59811400	Enhancers	Fetal Brain Male	brain
27	chr8:59808600-59815200	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links