Variant report

Variant	rs1563392
Chromosome Location	chr8:121353692-121353693
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121343786..121346292-chr8:121352611..121354740,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10096828	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1031576	0.97[ASN][1000 genomes]
rs10955969	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11774731	0.92[ASN][1000 genomes]
rs11776868	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs11782639	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[ASN][1000 genomes]
rs13255609	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13438950	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1563390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1563391	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1563393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1563394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1563395	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1563396	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1563397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1563398	0.97[ASN][1000 genomes]
rs1563399	0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs2034843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2034844	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2168406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2168407	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2198750	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2290521	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2290523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2290524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34104524	0.90[ASN][1000 genomes]
rs35248031	0.97[ASN][1000 genomes]
rs4143484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4870726	0.92[ASN][1000 genomes]
rs4871058	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4871059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4871060	0.87[YRI][hapmap]
rs6469917	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6469918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6982921	0.97[ASN][1000 genomes]
rs6987036	0.99[ASN][1000 genomes]
rs7001798	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7003062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7017523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7821701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7823806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7823977	0.98[ASN][1000 genomes]
rs7824821	0.97[ASN][1000 genomes]
rs7828515	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[ASN][1000 genomes]
rs7828729	0.95[CHB][hapmap];0.96[JPT][hapmap];0.97[ASN][1000 genomes]
rs7832817	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7838078	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7846160	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[ASN][1000 genomes]
rs930852	1.00[CHB][hapmap];0.96[JPT][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9650079	0.90[ASN][1000 genomes]
rs9650080	0.89[ASN][1000 genomes]
rs980825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121320400-121372600	Weak transcription	Fetal Intestine Small	intestine
2	chr8:121333800-121383800	Weak transcription	Fetal Intestine Large	intestine
3	chr8:121344200-121361400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:121346400-121377600	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:121346600-121355400	Weak transcription	Gastric	stomach
6	chr8:121347400-121358800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:121348200-121356200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:121348200-121356200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:121348200-121357600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:121348200-121359200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:121348600-121359600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr8:121348800-121354000	Weak transcription	HSMM	muscle
13	chr8:121348800-121355000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:121348800-121359000	Weak transcription	Fetal Brain Male	brain
15	chr8:121349000-121354000	Weak transcription	Aorta	Aorta
16	chr8:121349000-121355400	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:121349200-121356400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:121349200-121357600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:121350400-121354400	Weak transcription	Placenta	Placenta
20	chr8:121351200-121357600	Weak transcription	Esophagus	oesophagus
21	chr8:121352000-121354400	Weak transcription	Fetal Lung	lung
22	chr8:121352800-121356600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:121352800-121357400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:121353000-121354600	Weak transcription	HSMMtube	muscle
25	chr8:121353400-121354600	Strong transcription	Fetal Stomach	stomach
26	chr8:121353400-121356200	Weak transcription	NHDF-Ad	bronchial
27	chr8:121353600-121353800	Strong transcription	Ovary	ovary

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