Variant report

Variant	rs9650079
Chromosome Location	chr8:121334388-121334389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10096828	0.91[ASN][1000 genomes]
rs1031576	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10955969	0.91[ASN][1000 genomes]
rs11774731	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11776868	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11782639	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13255609	0.91[ASN][1000 genomes]
rs13438950	0.88[ASN][1000 genomes]
rs1563390	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1563391	0.91[ASN][1000 genomes]
rs1563392	0.90[ASN][1000 genomes]
rs1563393	0.91[ASN][1000 genomes]
rs1563394	0.91[ASN][1000 genomes]
rs1563395	0.91[ASN][1000 genomes]
rs1563396	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1563397	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1563398	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1563399	0.82[ASN][1000 genomes]
rs2034843	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2034844	0.91[ASN][1000 genomes]
rs2168406	0.91[ASN][1000 genomes]
rs2168407	0.91[ASN][1000 genomes]
rs2198750	0.91[ASN][1000 genomes]
rs2219243	0.81[EUR][1000 genomes]
rs2290521	0.91[ASN][1000 genomes]
rs2290523	0.91[ASN][1000 genomes]
rs2290524	0.91[ASN][1000 genomes]
rs34104524	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248031	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4143484	0.91[ASN][1000 genomes]
rs4870726	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4871058	0.91[ASN][1000 genomes]
rs4871059	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6469917	0.91[ASN][1000 genomes]
rs6469918	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6982921	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6987036	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7001798	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7001937	0.81[EUR][1000 genomes]
rs7003062	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7017523	0.91[ASN][1000 genomes]
rs7821701	0.91[ASN][1000 genomes]
rs7823806	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7823977	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7824821	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7828515	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7828729	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7832817	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7838078	0.91[ASN][1000 genomes]
rs7846160	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs930852	0.89[ASN][1000 genomes]
rs9650080	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs980825	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121284800-121347800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:121320400-121372600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:121322400-121337400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:121323200-121344800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:121323800-121345800	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:121325200-121334600	Weak transcription	Placenta	Placenta
7	chr8:121328600-121340800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:121331000-121336600	Weak transcription	Fetal Lung	lung
9	chr8:121331000-121336600	Weak transcription	Ovary	ovary
10	chr8:121331800-121336600	Weak transcription	Osteobl	bone
11	chr8:121332000-121336600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:121332200-121336600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:121332200-121336800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:121332200-121338800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:121332400-121336600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:121332400-121336600	Weak transcription	Fetal Stomach	stomach
17	chr8:121333800-121336600	Weak transcription	Aorta	Aorta
18	chr8:121333800-121383800	Weak transcription	Fetal Intestine Large	intestine
19	chr8:121334000-121338000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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