Variant report

Variant	rs6987036
Chromosome Location	chr8:121341817-121341818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10096828	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031576	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10955969	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774731	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11776868	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11782639	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13255609	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438950	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1563390	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563391	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563392	0.99[ASN][1000 genomes]
rs1563393	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563394	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563395	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563396	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1563397	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1563398	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1563399	0.89[ASN][1000 genomes]
rs2034843	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2034844	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168406	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168407	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2198750	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290521	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290523	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290524	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34104524	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35248031	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4143484	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870726	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4871058	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871059	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871060	0.83[EUR][1000 genomes]
rs6469917	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469918	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6982921	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7001798	0.93[ASN][1000 genomes]
rs7003062	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7017523	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821701	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823806	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823977	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7824821	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828515	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828729	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7832817	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7838078	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846160	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs930852	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9650079	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9650080	0.90[ASN][1000 genomes]
rs980825	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121284800-121347800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:121320400-121372600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:121323200-121344800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:121323800-121345800	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:121333800-121383800	Weak transcription	Fetal Intestine Large	intestine
6	chr8:121337000-121344200	Weak transcription	Fetal Lung	lung
7	chr8:121337000-121345800	Weak transcription	Fetal Stomach	stomach
8	chr8:121337000-121348000	Weak transcription	Ovary	ovary
9	chr8:121337400-121346800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:121338600-121344200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:121339200-121342200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:121339600-121342200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:121339800-121346800	Weak transcription	Aorta	Aorta
14	chr8:121340800-121342400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr8:121341000-121342200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:121341000-121342800	Enhancers	Osteobl	bone
17	chr8:121341000-121347600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:121341200-121342400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:121341600-121342600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:121341600-121343800	Weak transcription	NHDF-Ad	bronchial
21	chr8:121341800-121342400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:121341800-121342400	Enhancers	HMEC	breast
23	chr8:121341800-121345600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr8:121341800-121347600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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