Variant report

Variant	rs1563510
Chromosome Location	chr5:29785776-29785777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:29784571..29787438-chr5:29789979..29792969,3	K562	blood:
2	chr5:29785498..29787507-chr5:29789131..29791399,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10055152	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10520952	0.82[CHB][hapmap]
rs12522971	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12523035	1.00[CHB][hapmap]
rs1379051	0.83[EUR][1000 genomes]
rs1428314	1.00[CHB][hapmap]
rs1463414	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16899413	1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16899416	1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2019012	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2330137	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2330138	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2330139	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2925526	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2972789	0.83[AFR][1000 genomes]
rs4343854	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4458582	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4621572	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58977762	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6886264	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6888568	0.85[AMR][1000 genomes]
rs6893901	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9292341	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv830244	chr5:29630122-29790611	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1029329	chr5:29778216-29805002	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1026460	chr5:29785485-29814309	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv1034228	chr5:29785485-29815868	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv1018046	chr5:29785776-29818396	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29781200-29788400	Weak transcription	HepG2	liver
2	chr5:29785400-29787800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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