Variant report
| Variant | rs1428314 |
|---|---|
| Chromosome Location | chr5:29852839-29852840 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:7)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:7 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:29852340..29854743-chr5:29859491..29862426,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000249744 | TF binding region |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10520952 | 0.94[CEU][hapmap];0.82[CHB][hapmap];0.82[GIH][hapmap];0.92[TSI][hapmap] |
| rs10940826 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10940827 | 1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap] |
| rs11748565 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11956675 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12523035 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap] |
| rs13153010 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1366313 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1428312 | 1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs16899407 | 0.94[CEU][hapmap] |
| rs16899413 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap] |
| rs16899416 | 0.88[CEU][hapmap];1.00[CHB][hapmap] |
| rs16899419 | 0.88[CEU][hapmap] |
| rs16899572 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs16899687 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2019012 | 1.00[CHB][hapmap] |
| rs2330316 | 1.00[CEU][hapmap];0.95[YRI][hapmap] |
| rs2925526 | 1.00[CHB][hapmap] |
| rs72745293 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7704413 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7724158 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3385368 | chr5:29548608-29910057 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
