Variant report

Variant	rs11956675
Chromosome Location	chr5:29839458-29839459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10520952	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[GIH][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs10940824	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10940826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10940827	0.85[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11748565	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12518960	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12523035	0.94[CEU][hapmap]
rs12655040	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13153010	0.81[AMR][1000 genomes]
rs1366313	0.86[EUR][1000 genomes]
rs1428312	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1428314	0.94[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16899407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16899413	0.94[CEU][hapmap]
rs16899416	0.94[CEU][hapmap]
rs16899419	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16899572	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16899687	0.88[EUR][1000 genomes]
rs2124716	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2330316	0.94[CEU][hapmap];0.95[CHB][hapmap]
rs72743256	0.81[EUR][1000 genomes]
rs72745293	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7704413	0.82[AMR][1000 genomes]
rs7724158	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29839200-29839800	Enhancers	Fetal Intestine Large	intestine

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