Variant report
| Variant | rs10940826 |
|---|---|
| Chromosome Location | chr5:29841276-29841277 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000200623 | Chromatin interaction |
| ENSG00000174444 | Chromatin interaction |
| ENSG00000174442 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10520952 | 0.80[EUR][1000 genomes] |
| rs10940824 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11748565 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11956675 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12518960 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12655040 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13153010 | 0.81[AMR][1000 genomes] |
| rs1366313 | 0.86[EUR][1000 genomes] |
| rs1428312 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1428314 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs16899572 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs16899687 | 0.88[EUR][1000 genomes] |
| rs2124716 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72743256 | 0.81[EUR][1000 genomes] |
| rs72745293 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7704413 | 0.82[AMR][1000 genomes] |
| rs7724158 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016603 | chr5:29102713-29843965 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv537712 | chr5:29102713-29843965 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 3 | esv3385368 | chr5:29548608-29910057 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
