Variant report

Variant	rs16899572
Chromosome Location	chr5:29848798-29848799
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DROSHA-11	chr5:29848791-29849325	NONHSAT100865

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10520952	0.94[CEU][hapmap];0.83[CHB][hapmap]
rs10940824	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10940826	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10940827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11748565	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11956675	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12518960	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12523035	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12655040	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13153010	0.90[AMR][1000 genomes]
rs1366313	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1428312	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1428314	1.00[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16899407	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs16899413	0.83[CEU][hapmap]
rs16899416	0.83[CEU][hapmap]
rs16899419	0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap]
rs16899687	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2124716	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2330316	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap]
rs72745293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704413	0.91[AMR][1000 genomes]
rs7724158	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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