Variant report

Variant	rs10940824
Chromosome Location	chr5:29831694-29831695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10520952	0.94[CEU][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10805537	0.82[ASN][1000 genomes]
rs10940816	0.81[ASN][1000 genomes]
rs10940817	0.87[ASN][1000 genomes]
rs10940826	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10940827	0.87[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap]
rs11737948	0.87[ASN][1000 genomes]
rs11745229	0.87[ASN][1000 genomes]
rs11745291	0.87[ASN][1000 genomes]
rs11748565	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11956675	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12516688	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12517227	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12517273	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12518960	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12522971	0.85[ASN][1000 genomes]
rs12523035	0.87[CEU][hapmap]
rs12651890	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12655040	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656086	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1350222	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1428312	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1428314	0.87[CEU][hapmap]
rs1456641	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1456642	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1456643	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16899407	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16899413	0.88[CEU][hapmap]
rs16899416	0.88[CEU][hapmap]
rs16899419	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16899422	0.87[ASN][1000 genomes]
rs16899572	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2124716	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2219325	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2330316	0.87[CEU][hapmap];0.91[CHB][hapmap];0.81[YRI][hapmap]
rs4343854	0.85[ASN][1000 genomes]
rs4458582	0.85[ASN][1000 genomes]
rs4621572	0.85[ASN][1000 genomes]
rs58306893	0.81[ASN][1000 genomes]
rs59897238	0.87[ASN][1000 genomes]
rs61330469	0.85[ASN][1000 genomes]
rs61531233	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62348709	0.82[ASN][1000 genomes]
rs66702955	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67126601	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6877378	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72743255	0.87[ASN][1000 genomes]
rs72743256	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72743261	0.87[ASN][1000 genomes]
rs72743275	0.87[ASN][1000 genomes]
rs72745293	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29827800-29832800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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