Variant report

Variant	rs1565663
Chromosome Location	chr4:125408531-125408532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10002485	0.82[AFR][1000 genomes]
rs1388986	0.82[AFR][1000 genomes]
rs1492743	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2390687	1.00[AMR][1000 genomes]
rs312506	1.00[AMR][1000 genomes]
rs4833302	1.00[YRI][hapmap]
rs4833985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7672091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7698315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs923776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs923777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125404800-125410000	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:125404800-125412600	Weak transcription	Fetal Stomach	stomach
3	chr4:125405000-125411200	Weak transcription	Fetal Heart	heart
4	chr4:125405400-125409000	Weak transcription	Brain Germinal Matrix	brain
5	chr4:125405400-125410400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:125408200-125408800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:125408400-125410200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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