Variant report

Variant	rs7698315
Chromosome Location	chr4:125403222-125403223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10002485	0.82[AFR][1000 genomes]
rs1388986	0.82[AFR][1000 genomes]
rs1492743	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1565663	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2390687	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs312506	1.00[AMR][1000 genomes]
rs4833302	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs4833985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7672091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs923776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs923777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125389800-125404200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:125399200-125404000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:125399600-125404400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:125399800-125403800	Weak transcription	Fetal Heart	heart
5	chr4:125401000-125404000	Weak transcription	Fetal Lung	lung
6	chr4:125401000-125404000	Weak transcription	HUVEC	blood vessel
7	chr4:125402800-125404200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:125403000-125404000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:125403000-125404000	Weak transcription	NHDF-Ad	bronchial
10	chr4:125403000-125406000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:125403200-125403800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:125403200-125404400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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