Variant report

Variant	rs1566105
Chromosome Location	chr5:178342035-178342036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178338284..178340822-chr5:178341370..178344365,2	K562	blood:

Variant related genes	Relation type
ENSG00000198939	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1046724	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs11249600	0.91[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11744810	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs11745435	0.92[EUR][1000 genomes]
rs11748636	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11749871	0.93[EUR][1000 genomes]
rs11952817	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs11955491	0.92[EUR][1000 genomes]
rs11955549	0.84[EUR][1000 genomes]
rs11956161	0.92[EUR][1000 genomes]
rs11959507	0.86[EUR][1000 genomes]
rs12516516	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13166562	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13171869	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13182467	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13183468	0.83[EUR][1000 genomes]
rs13189231	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13189941	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1496948	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17652441	0.90[EUR][1000 genomes]
rs1826863	0.83[EUR][1000 genomes]
rs1845939	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2047356	0.93[EUR][1000 genomes]
rs34904538	0.92[EUR][1000 genomes]
rs35245718	0.89[EUR][1000 genomes]
rs35974815	0.92[EUR][1000 genomes]
rs35984063	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36077478	0.83[ASN][1000 genomes]
rs6600996	0.89[EUR][1000 genomes]
rs6897952	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs732531	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7445002	0.91[EUR][1000 genomes]
rs7448421	0.90[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7448445	0.95[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7722159	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7722441	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335600-178349000	ZNF genes & repeats	Liver	Liver
2	chr5:178335800-178342200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr5:178340200-178342600	Weak transcription	Fetal Stomach	stomach
5	chr5:178340400-178342800	Weak transcription	Left Ventricle	heart
6	chr5:178340400-178344800	Weak transcription	Fetal Brain Male	brain
7	chr5:178340400-178345400	Weak transcription	Placenta	Placenta
8	chr5:178340600-178343000	Weak transcription	Brain Substantia Nigra	brain
9	chr5:178341600-178342200	ZNF genes & repeats	Brain Anterior Caudate	brain
10	chr5:178341600-178342200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
11	chr5:178341600-178342800	ZNF genes & repeats	Brain Germinal Matrix	brain
12	chr5:178341600-178343400	ZNF genes & repeats	Psoas Muscle	Psoas
13	chr5:178341600-178343800	ZNF genes & repeats	Aorta	Aorta
14	chr5:178341600-178345800	ZNF genes & repeats	Fetal Lung	lung
15	chr5:178341600-178345800	ZNF genes & repeats	Ovary	ovary
16	chr5:178341600-178347000	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr5:178341600-178347200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
18	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
19	chr5:178341800-178342200	ZNF genes & repeats	Fetal Kidney	kidney
20	chr5:178341800-178342200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
21	chr5:178341800-178342800	Strong transcription	Brain Cingulate Gyrus	brain
22	chr5:178341800-178343800	ZNF genes & repeats	Pancreas	Pancrea
23	chr5:178342000-178342200	ZNF genes & repeats	Fetal Heart	heart
24	chr5:178342000-178342800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:178342000-178342800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:178342000-178343600	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr5:178342000-178348200	Weak transcription	Right Ventricle	heart

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