Variant report

Variant	rs1826863
Chromosome Location	chr5:178355230-178355231
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10036425	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043786	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1046724	0.81[EUR][1000 genomes]
rs11249600	0.81[EUR][1000 genomes]
rs11744810	0.81[EUR][1000 genomes]
rs11745435	0.81[EUR][1000 genomes]
rs11748636	0.81[EUR][1000 genomes]
rs11749871	0.82[EUR][1000 genomes]
rs11955491	0.82[EUR][1000 genomes]
rs11956161	0.81[EUR][1000 genomes]
rs11959507	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12516516	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13166562	0.86[EUR][1000 genomes]
rs13171869	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13172044	0.88[AMR][1000 genomes]
rs13182467	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13183468	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189231	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13189941	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1496948	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1566105	0.83[EUR][1000 genomes]
rs17652441	0.80[EUR][1000 genomes]
rs1845939	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2047356	0.82[EUR][1000 genomes]
rs34904538	0.81[EUR][1000 genomes]
rs35123052	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35869073	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35974815	0.81[EUR][1000 genomes]
rs35984063	0.81[EUR][1000 genomes]
rs55841430	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6600996	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897952	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7445002	0.80[EUR][1000 genomes]
rs7448421	0.81[EUR][1000 genomes]
rs7448445	0.81[EUR][1000 genomes]
rs7722159	0.87[EUR][1000 genomes]
rs953741	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5156	chr5:178346825-178367067	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr5:178347800-178366800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr5:178347800-178367400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr5:178348000-178359800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:178348000-178360200	ZNF genes & repeats	Left Ventricle	heart
8	chr5:178348800-178357800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:178351400-178367400	ZNF genes & repeats	Brain Anterior Caudate	brain
10	chr5:178351600-178359600	ZNF genes & repeats	Aorta	Aorta
11	chr5:178352200-178359200	ZNF genes & repeats	Brain Germinal Matrix	brain
12	chr5:178352200-178363200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
13	chr5:178352200-178366800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
14	chr5:178352200-178367200	ZNF genes & repeats	Brain Substantia Nigra	brain
15	chr5:178352400-178360200	ZNF genes & repeats	Ovary	ovary
16	chr5:178352400-178369200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:178352600-178357000	Weak transcription	Fetal Heart	heart
18	chr5:178353400-178360400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
19	chr5:178353400-178367400	ZNF genes & repeats	Fetal Muscle Leg	muscle
20	chr5:178353600-178361800	ZNF genes & repeats	Colon Smooth Muscle	Colon
21	chr5:178353600-178365800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
22	chr5:178353800-178355400	ZNF genes & repeats	Fetal Kidney	kidney
23	chr5:178353800-178356600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:178353800-178356600	ZNF genes & repeats	Esophagus	oesophagus
25	chr5:178353800-178357800	ZNF genes & repeats	Lung	lung
26	chr5:178353800-178358400	ZNF genes & repeats	Pancreas	Pancrea
27	chr5:178353800-178362200	ZNF genes & repeats	Placenta	Placenta
28	chr5:178353800-178363000	ZNF genes & repeats	Fetal Lung	lung
29	chr5:178353800-178364000	ZNF genes & repeats	Brain Angular Gyrus	brain
30	chr5:178353800-178366800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
31	chr5:178353800-178367200	ZNF genes & repeats	Brain Hippocampus Middle	brain
32	chr5:178353800-178374800	ZNF genes & repeats	Liver	Liver
33	chr5:178354000-178357800	ZNF genes & repeats	Fetal Stomach	stomach
34	chr5:178354000-178359800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
35	chr5:178354800-178355800	ZNF genes & repeats	Fetal Brain Male	brain
36	chr5:178354800-178356400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:178354800-178360200	ZNF genes & repeats	Right Ventricle	heart
38	chr5:178355000-178359800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:178355000-178359800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
40	chr5:178355000-178360400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
41	chr5:178355000-178360400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
42	chr5:178355200-178358600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland

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