Variant report

Variant	rs6600996
Chromosome Location	chr5:178346784-178346785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10036425	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043786	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1046724	0.82[EUR][1000 genomes]
rs11249600	0.82[EUR][1000 genomes]
rs11744810	0.82[EUR][1000 genomes]
rs11745435	0.82[EUR][1000 genomes]
rs11748636	0.82[EUR][1000 genomes]
rs11749871	0.83[EUR][1000 genomes]
rs11955491	0.83[EUR][1000 genomes]
rs11956161	0.82[EUR][1000 genomes]
rs11959507	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12516516	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13166562	0.87[EUR][1000 genomes]
rs13171869	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13172044	0.89[AMR][1000 genomes]
rs13182467	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13183468	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189231	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13189941	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1496948	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1566105	0.89[EUR][1000 genomes]
rs17652441	0.82[EUR][1000 genomes]
rs1826863	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1845939	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2047356	0.83[EUR][1000 genomes]
rs34904538	0.82[EUR][1000 genomes]
rs35123052	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35869073	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35974815	0.82[EUR][1000 genomes]
rs35984063	0.82[EUR][1000 genomes]
rs55841430	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897952	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7445002	0.82[EUR][1000 genomes]
rs7448421	0.82[EUR][1000 genomes]
rs7448445	0.82[EUR][1000 genomes]
rs7722159	0.88[EUR][1000 genomes]
rs953741	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv600464	chr5:178344648-178350709	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600465	chr5:178344648-178352002	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv600466	chr5:178344648-178352245	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv600467	chr5:178344648-178352820	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv600468	chr5:178344648-178353156	Weak transcription ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv819936	chr5:178345813-178351240	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv823354	chr5:178345876-178351699	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv821324	chr5:178345876-178353585	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv823355	chr5:178346031-178351699	Weak transcription ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335600-178349000	ZNF genes & repeats	Liver	Liver
2	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr5:178341600-178347000	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr5:178341600-178347200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
5	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
6	chr5:178342000-178348200	Weak transcription	Right Ventricle	heart
7	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr5:178343800-178348000	Weak transcription	Brain Angular Gyrus	brain
9	chr5:178345400-178347200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr5:178345600-178347600	Weak transcription	Fetal Kidney	kidney
11	chr5:178345600-178347800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr5:178345600-178348000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:178345600-178349400	Weak transcription	Primary T cells from cord blood	blood
14	chr5:178346000-178348000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:178346400-178346800	Weak transcription	Brain Substantia Nigra	brain
16	chr5:178346400-178347000	ZNF genes & repeats	Left Ventricle	heart
17	chr5:178346400-178351000	ZNF genes & repeats	Brain Hippocampus Middle	brain
18	chr5:178346600-178347000	ZNF genes & repeats	Aorta	Aorta
19	chr5:178346600-178347200	ZNF genes & repeats	Ovary	ovary
20	chr5:178346600-178349800	ZNF genes & repeats	Colon Smooth Muscle	Colon

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